Differences

This shows you the differences between two versions of the page.

Link to this comparison view

references_to_implemented_methods [2012/08/08 12:09]
robert added 2001 review by Baillet
references_to_implemented_methods [2013/04/24 17:40] (current)
stephenwhitmarsh
Line 1: Line 1:
 {{tag>eeg meg source headmodel freq statistics coherence}} {{tag>eeg meg source headmodel freq statistics coherence}}
  
-====== References ======= +====== References to implemented methods ======
-===== References to implemented methods ======+
  
-This list is far from complete, many more algorithms that have been published in papers are implemented in FieldTrip. If you want to know which paper describes a method in detail and it is not given here, you can ask on the email [[discussion list]].+This list is far from complete, many more algorithms that have been published in papers are implemented in FieldTrip. If you want to know which paper describes a method in detail and the information is not given here, you can ask on the email [[discussion list]].
  
 +If possible, please provide a link to the online version of the manuscript. A link to [[http://www.ncbi.nlm.nih.gov/pubmed|pubmed]] or [[http://www.sciencedirect.com|sciencedirect]] is in general nice, as it allows quick cross-referencing.
 +
 +If allowed, you can also upload a pdf version to the wiki and provide a link here. Please check [[http://www.sherpa.ac.uk/romeo/|Sherpa Romeo]] for the copyright conditions and whether you are allowed to
 +  - release the publisher version, i.e. the final online pdf version from Elsevier or so
 +  - release a [[http://www.eprints.org/openaccess/self-faq/#self-archiving|self-archived]] version, i.e. your own pdf (or word) document as it has been accepted for publication
 +  - not release a copy of the manuscript that is freely available to everyone
 ==== EEG and MEG forward modeling ==== ==== EEG and MEG forward modeling ====
  
Line 64: Line 69:
  
 Fa-Hsuan Lin, Thomas Witzel, Matti S. Hamalainen, Anders M. Dale, John W. Belliveau, and Steven M. Stufflebeam (2004): //[[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2884198/|Spectral spatiotemporal imaging of cortical oscillations and interactions in the human brain.]]// NeuroImage 23:582-595. Fa-Hsuan Lin, Thomas Witzel, Matti S. Hamalainen, Anders M. Dale, John W. Belliveau, and Steven M. Stufflebeam (2004): //[[http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2884198/|Spectral spatiotemporal imaging of cortical oscillations and interactions in the human brain.]]// NeuroImage 23:582-595.
 +
 +== Using multiple signal classification (MUSIC) to scan the source space ==
 +
 +Mosher JC, Lewis PS, Leahy RM. //[[http://www.ncbi.nlm.nih.gov/pubmed/1601435|Multiple dipole modeling and localization from spatio-temporal MEG data.]]// IEEE Trans Biomed Eng. 1992 Jun;39(6):541-57.
 +
 +Mosher JC, Baillet S, Leahy RM. //[[http://www.ncbi.nlm.nih.gov/pubmed/10426406|EEG source localization and imaging using multiple signal classification approaches.]]// J Clin Neurophysiol. 1999 May;16(3):225-38.
  
 ==== Frequency analysis ==== ==== Frequency analysis ====
Line 81: Line 92:
 J Neurosci. 1997 Jan 15;17(2):722-34. J Neurosci. 1997 Jan 15;17(2):722-34.
  
-==== Spatial realignment of channel-level MEG data ====+==== Dealing with different head positions and with movements ====
  
 Knosche TR. Knosche TR.
Line 87: Line 98:
 Biomed Tech (Berl). 2002 Mar;47(3):59-62. Biomed Tech (Berl). 2002 Mar;47(3):59-62.
  
-== Scalp current density mapping ==+Stolk A, Todorovic A, Schoffelen J-M, Oostenveld R. 
 +// {{:faq:stolkneuroimage2013.pdf|Online and offline tools for head movement compensation in MEG.}}  
 +// NeuroImage. 2013. 
 + 
 +==== Scalp current density mapping ====
  
 TF Oostendorp, A van Oosterom. TF Oostendorp, A van Oosterom.
Line 101: Line 116:
 Bastiaansen, M. C. M., & Knösche, T. R. (2000). //[[http://www.ncbi.nlm.nih.gov/pubmed/10880806|MEG tangential derivative Bastiaansen, M. C. M., & Knösche, T. R. (2000). //[[http://www.ncbi.nlm.nih.gov/pubmed/10880806|MEG tangential derivative
 mapping applied to Event-Related Desynchronization (ERD) research.]]// Clinical Neurophysiology, 111, 1300-1305. mapping applied to Event-Related Desynchronization (ERD) research.]]// Clinical Neurophysiology, 111, 1300-1305.
- 
-==== Statistics for EEG- and MEG-data ==== 
- 
-== Statistical inference by means of permutation == 
- 
-Maris E., Oostenveld R. //[[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17517438|Nonparametric statistical testing of EEG- and MEG-data.]]// J Neurosci Methods. 2007 Apr 10; 
- 
-Maris E., Schoffelen J.M., Fries P. //[[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17395267|Nonparametric statistical testing of coherence differences.]]// 
-J Neurosci Methods. 2007 Jun 15;163(1):161-75. 
  
 ==== Connectivity analysis ==== ==== Connectivity analysis ====
Line 165: Line 171:
 Vinck M, Oostenveld R, van Wingerden M, Battaglia F, Pennartz CM. //[[http://www.ncbi.nlm.nih.gov/pubmed/21276857|An improved index of phase-synchronization for electrophysiological data in the presence of volume-conduction, noise and sample-size bias.]]// Neuroimage. 2011 Apr 15;55(4):1548-65. Epub 2011 Jan 27. PMID: 21276857 Vinck M, Oostenveld R, van Wingerden M, Battaglia F, Pennartz CM. //[[http://www.ncbi.nlm.nih.gov/pubmed/21276857|An improved index of phase-synchronization for electrophysiological data in the presence of volume-conduction, noise and sample-size bias.]]// Neuroimage. 2011 Apr 15;55(4):1548-65. Epub 2011 Jan 27. PMID: 21276857
  
-==== Brain-computer interfacing ====+== Spike-LFP phase-coupling measures ==
  
-Van Gerven, M.A.J., JensenO. //[[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T04-4VGPJNH-1&_user=10&;_rdoc=1&_fmt=&_orig=search&;_sort=d&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=09def4bc21af5427ef3f82d069c45c1d|Attention Modulations of Posterior Alpha as a Control Signal for Two-Dimensional Brain-Computer Interfaces.]]// J Neurosci Methods2009; 179:78-84.+Vinck, M, Battaglia FP, Womelsdorf T, Pennartz CM//[[http://www.ncbi.nlm.nih.gov/pubmed/22187161|Improved measures of phase-coupling between spikes and the Local Field Potential.]]// 2011; DOI: 10.1007/s10827-011-0374-4 
 + 
 +==== Statistics for EEG- and MEG-data ==== 
 + 
 +Maris E. //[[http://onlinelibrary.wiley.com/doi/10.1111/j.1469-8986.2011.01320.x/pdf|Statistical Testing in Electrophysiological Studies]]// Psychophysiology (2012) Vol  49 No 4pp. 549-65.  
 + 
 +== Statistical inference by means of permutation == 
 + 
 +Maris E.Oostenveld R. //[[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17517438|Nonparametric statistical testing of EEG- and MEG-data.]]// J Neurosci Methods. 2007 Apr 10; 
 + 
 +Maris E., Schoffelen J.M., Fries P. //[[http://www.ncbi.nlm.nih.gov/sites/entrez?Db=pubmed&Cmd=ShowDetailView&TermToSearch=17395267|Nonparametric statistical testing of coherence differences.]]// 
 +J Neurosci Methods. 2007 Jun 15;163(1):161-75. 
 + 
 +== Multiple comparison corrections ==
 + 
 +Holm S. //[[http://www.jstor.org/stable/4615733|A Simple Sequentially Rejective Multiple Test Procedure.]]// Scandinavian Journal of Statistics, Vol. 6, No. 2 (1979), pp. 65-70. 
 + 
 +Hochberg Y. //[[http://www-stat.wharton.upenn.edu/~steele/Courses/956/Resource/MultipleComparision/Hochberg88.pdf|A Sharper Bonferroni Procedure for Multiple Tests of Significance]]// Biometrika Vol. 75 No. 4 (1988), pp. 800–802. 
 + 
 +Genovese C.R., Lazar N.A., Nichols T. //[[http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.208.9215&rep=rep1&type=pdf|Thresholding of Statistical Maps in Functional Neuroimaging Using the False Discovery Rate]]// Neuroimage Vol15 No. 4 (2002), pp. 870-8. 
 + 
 + 
 +== Machine learning ==
  
-==== Machine learning ==== 
 Van Gerven, M.A.J., Hesse, C., Jensen, O., Heskes, T. // [[http://www.ncbi.nlm.nih.gov/pubmed/19285139|Interpreting Single Trial Data using Groupwise Regularisation.]]// Van Gerven, M.A.J., Hesse, C., Jensen, O., Heskes, T. // [[http://www.ncbi.nlm.nih.gov/pubmed/19285139|Interpreting Single Trial Data using Groupwise Regularisation.]]//
 Neuroimage. 2009; 46(3):665-76. Neuroimage. 2009; 46(3):665-76.
  
-==== Spike-LFP phase-coupling measures ====+==== Brain-computer interfacing ====
  
-Vinck, M, Battaglia FP, Womelsdorf TPennartz CM. //[[http://www.ncbi.nlm.nih.gov/pubmed/22187161|Improved measures of phase-coupling between spikes and the Local Field Potential.]]// 2011DOI: 10.1007/s10827-011-0374-4 +Van Gerven, M.A.J.JensenO. //[[http://www.sciencedirect.com/science?_ob=ArticleURL&;_udi=B6T04-4VGPJNH-1&_user=10&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000050221&_version=1&_urlVersion=0&_userid=10&md5=09def4bc21af5427ef3f82d069c45c1d|Attention Modulations of Posterior Alpha as a Control Signal for Two-Dimensional Brain-Computer Interfaces.]]// J Neurosci Methods. 2009; 179:78-84.
- +
-===== References to review papers ====== +
-==== EEG and MEG source estimation ====+
  
-Michel, C.M. et al. //[[http://www.ncbi.nlm.nih.gov/pubmed/15351361|EEG source imaging.]]// Clin Neurophysiol, 2004; 115(10):2195-222. 
  
-Baillet, S and Mosher, J.C. //[[http://www.cubric.cf.ac.uk/Documentation/meg/meg-background-reading/baillet_IEEE_2001.pdf|Electomagnetic Brain Mapping]]// IEEE Signal Processing Magazine, 2001; November:14-30. 
references_to_implemented_methods.1344420597.txt.gz · Last modified: 2012/08/08 12:09 by robert

You are here: startreferences_to_implemented_methods
This DokuWiki features an Anymorphic Webdesign theme, customised by Eelke Spaak and Stephen Whitmarsh.
www.chimeric.de Valid CSS Driven by DokuWiki do yourself a favour and use a real browser - get firefox!! Recent changes RSS feed Valid XHTML 1.0