Note that this reference documentation is identical to the help that is displayed in Matlab when you type “help ft_volumenormalise”.
FT_VOLUMENORMALISE normalises anatomical and functional volume data
to a template anatomical MRI.
Use as
[volume] = ft_volumenormalise(cfg, volume)
The input volume should be the result from FT_SOURCEINTERPOLATE.
Alternatively, the input can contain a single anatomical MRI that
was read with READ_FCDC_MRI, or you can specify a filename of an
anatomical MRI.
Configuration options are:
cfg.spmversion = 'spm8' (default) or 'spm2'
cfg.template = filename of the template anatomical MRI (default is the 'T1.mnc' (spm2) or 'T1.nii' (spm8)
in the (spm-directory)/templates/)
cfg.parameter = cell-array with the functional data which has to
be normalised, can be 'all'
cfg.downsample = integer number (default = 1, i.e. no downsampling)
cfg.coordinates = 'spm, 'ctf' or empty for interactive (default = [])
cfg.name = string for output filename
cfg.write = 'no' (default) or 'yes', writes the segmented volumes to SPM2
compatible analyze-file, with the suffix
_anatomy for the anatomical MRI volumeFT_
_param for each of the functional volumes
cfg.nonlinear = 'yes' (default) or 'no', estimates a nonlinear transformation
in addition to the linear affine registratFT_ion. If a reasonably
accurate normalisation is sufficient, a purely linearly transformed
image allows for 'reverse-normalisation', which might come in handy
when for example a region of interest is dFT_efined on the normalised
group-average.