FieldTrip

Note that this reference documentation is identical to the help that is displayed in Matlab when you type “help ft_analysisprotocol”.

  FT_ANALYSISPROTOCOL tries to reconstruct the complete analysis protocol that
  was used to create an arbitrary FieldTrip data structure. It will create
  a Matlab script (as text file) and a flowchart with a graphical
  representation.
 
  Use as
    ft_analysisprotocol(cfg, data)
 
  where the first cfg input contains the settings that apply to the
  behaviour of this particular function and the second data input argument
  can be the output of any FieldTrip function, e.g. FT_PREPROCESSING,
  FT_TIMELOCKANALYSIS, FT_SOURCEANALYSIS, FT_FREQSTATISTICS or whatever you like.
 
  Alternatively, for the second input argument you can also only give the
  configuration of the processed data (i.e. "data.cfg") instead of the full
  data.
 
  The configuration options that apply to the behaviour of this function are
   cfg.feedback   = 'no', 'text', 'gui' or 'yes', whether text and/or
                    graphical feedback should be presented (default = 'yes')
   cfg.showinfo   = string or cell array of strings, information to display
                    in the gui boxes, can be any combination of
                    'functionname', 'revision', 'matlabversion',
                    'computername', 'username', 'calltime', 'timeused',
                    'memused', 'workingdir', 'scriptpath' (default =
                    'functionname', only display function name). Can also
                    be 'all', show all info. Please note that if you want
                    to show a lot of information, this will require a lot
                    of screen real estate.
   cfg.filename   = string, filename of m-file to which the script will be
                    written (default = [])
   cfg.remove     = cell-array with strings, determines which objects will
                    be removed from the configuration prior to writing it to
                    file. For readibility of the script, you may want to
                    remove the large objectssuch as event structure, trial
                    definition, source positions
  cfg.keepremoved = 'yes' or 'no', determines whether removed fields are
                    completely removed, or only replaced by a short textual
                    description (default = 'no')
 
  This function uses the nested cfg and cfg.previous that are present in
  the data structure. It will use the configuration and the nested previous
  configurations to climb all the way back into the tree. This funtction
  will print a complete Matlab script to screen (and optionally to file).
  Furthermore, it will show an interactive graphical flowchart
  representation of the steps taken during the analysis. In the flowchart
  you can click on one of the steps to see the configuration details of
  that step.
 
  Note that the nested cfg and cfg.previous in your data might not contain
  all details that are required to reconstruct a complete and valid
  analysis script.