2012-03-06 11:39  marvger

	* [r5399] external/gerven/pls/sopls.m: improved checking of fieldnames in ft_freqstatistics

2012-01-09 14:52  roboos

	* [r5104] external/farquhar/repop/repop.mexmac, external/farquhar/repop/repop.mexmaci,
	  external/farquhar/repop/repop.mexmaci64, external/farquhar/tprod/tprod.mexa64,
	  external/farquhar/tprod/tprod.mexmac, external/farquhar/tprod/tprod.mexmaci,
	  external/farquhar/tprod/tprod.mexw32, external/gerven/gmrflab/fastinv.mexglx,
	  external/gerven/gmrflab/fastinvex.mexglx, external/gerven/gmrflab/fastinvex.mexmaci64,
	  external/gerven/gmrflab/fastinvex.mexw64, external/gerven/gmrflab/fastinvre.mexglx,
	  external/gerven/gmrflab/fastinvre.mexmaci64, external/gerven/gmrflab/fastinvre.mexw32,
	  external/gerven/gmrflab/fastinvre.mexw64, external/gerven/gmrflab/fastinvre64.mexa64,
	  external/gerven/gmrflab/fastinvre64.mexglx, external/gerven/gmrflab/fastinvre64.mexmaci,
	  external/gerven/gmrflab/fastinvre64.mexmaci64, external/gerven/gmrflab/fastinvre64.mexw32,
	  external/gerven/gmrflab/fastinvre64.mexw64, external/glmnet/glmnetMex.dll,
	  external/glmnet/glmnetMex.mexa64, external/glmnet/glmnetMex.mexglx,
	  external/glmnet/glmnetMex.mexmaci, external/glmnet/glmnetMex.mexmaci64,
	  external/glmnet/glmnetMex.mexw32, external/glmnet/glmnetMex.mexw64,
	  external/murphy/KPMstats/parzenC.dll, external/murphy/KPMstats/parzenC.mexglx,
	  external/murphy/KPMtools/colmult.mexglx, external/murphy/KPMtools/normaliseC.dll,
	  external/murphy/KPMtools/rectintLoopC.dll, external/murphy/KPMtools/rectintLoopC.mexglx,
	  external/murphy/KPMtools/rectintSparseLoopC.dll, external/murphy/KPMtools/repmatC.dll,
	  external/murphy/KPMtools/repmatC.mexglx: enhancement - cleaned up the properties on all
	  mex files, as per http://bugzilla.fcdonders.nl/show_bug.cgi?id=1237#c14

2011-12-12 13:45  marvger

	* [r5016] external/gerven/pls/opls.m: added opls method

2011-12-12 12:16  marvger

	* [r5015] external/gerven/pls/sopls.m: pls code

2011-11-20 17:57  marvger

	* [r4778] predictors/ft_mv_glmnet.m: handled libgfortran bug in ft_mv_glmnet

2011-11-16 18:26  marvger

	* [r4762] predictors/ft_mv_glmnet.m, predictors/ft_mv_sopls.m, preprocessors/ft_mv_csp.m,
	  statistics/69digits.mat, statistics/ft_mv_mcnemar.m: PLS now allows arbitrary regularizers

2011-10-29 10:10  roboos

	* [r4624] external/farquhar/repop/repop.mexmaci, external/farquhar/repop/repop.mexmaci64,
	  external/farquhar/tprod/tprod.mexmaci, external/gerven/gmrflab/fastinvex.mexmaci64,
	  external/gerven/gmrflab/fastinvre.mexmaci64, external/gerven/gmrflab/fastinvre.mexw32,
	  external/gerven/gmrflab/fastinvre64.mexmaci,
	  external/gerven/gmrflab/fastinvre64.mexmaci64, external/gerven/gmrflab/fastinvre64.mexw32,
	  external/gerven/pls/glmnet_bls.m, external/gerven/pls/ospls.m,
	  external/gerven/utilities/cartprod.m, external/gerven/utilities/run_parallel.m,
	  external/glmnet/glmnetMex.mexmaci, external/herman/rbf_ker.m, external/herman/rbf_prim.m,
	  meta/ft_mv_ensemble.m, meta/ft_mv_gridsearch.m, meta/ft_mv_meta.m,
	  meta/ft_mv_one_against_one.m, meta/ft_mv_one_against_rest.m, predictors/ft_mv_sopls.m,
	  statistics/ft_mv_binomial.m: cleaned up the svn properties according to development/svn on
	  the wiki
	  this ensures that m files are not executable and that Rev and Id are correctly replaced

2011-10-24 18:33  marvger

	* [r4577] statistics/69digits.mat: added structural scan to example data

2011-10-24 15:02  marvger

	* [r4573] external/gerven/gmrflab/fastinvre.mexw32,
	  external/gerven/gmrflab/fastinvre64.mexmaci, external/gerven/gmrflab/fastinvre64.mexw32:
	  added compiled windows mex files for glmnet classifier

2011-09-16 10:52  marvger

	* [r4235] preprocessors/ft_mv_csp.m: update common spatial pattern documentation

2011-09-05 07:24  marvger

	* [r4099] external/gerven/pls/glmnet_bls.m, external/gerven/pls/ospls.m,
	  predictors/ft_mv_glmnet.m, predictors/ft_mv_sopls.m, statistics/ft_mv_binomial.m: added
	  sparse orthonormalized partial least squares algorithm

2011-06-10 11:00  marvger

	* [r3673] external/glmnet/glmnetMex.mexmaci, external/glmnet/glmnetMex.mexmaci64: added
	  64bit version of glmnet to multivariate module

2011-06-09 12:25  marvger

	* [r3658] external/gerven/pls/elastic.m, predictors/ft_mv_glmnet.m: update

2011-06-02 21:45  marvger

	* [r3621] predictors/ft_mv_blogreg.m, statistics/ft_mv_performance.m: multivariate update

2011-05-22 12:30  marvger

	* [r3570] predictors/ft_mv_glmnet.m: partial least squares

2011-05-19 12:44  marvger

	* [r3563] predictors/ft_mv_glmnet.m: update multivariate

2011-05-19 12:41  marvger

	* [r3562] predictors/ft_mv_glmnet.m: update multivariate

2011-05-19 12:35  marvger

	* [r3561] statistics/ft_mv_performance.m: update multivariate

2011-05-18 17:47  marvger

	* [r3560] predictors/ft_mv_blogreg.m, predictors/ft_mv_glmnet.m: taskcoupling in
	  ft_mv_blogreg changed

2011-05-13 13:54  marvger

	* [r3539] meta/ft_mv_one_against_one.m, predictors/ft_mv_blogreg.m,
	  predictors/ft_mv_glmnet.m: blogreg documentation

2011-05-11 17:36  marvger

	* [r3521] meta/ft_mv_one_against_one.m, statistics/ft_mv_crossvalidator.m: multivariate
	  update

2011-05-09 09:58  marvger

	* [r3471] predictors/ft_mv_glmnet.m, statistics/ft_mv_performance.m,
	  statistics/ft_mv_significance.m: glmnet update

2011-05-09 09:05  marvger

	* [r3470] predictors/ft_mv_glmnet.m: glmnet update

2011-05-09 07:03  marvger

	* [r3468] predictors/ft_mv_glmnet.m: glmnet update

2011-05-07 10:56  marvger

	* [r3467] meta/ft_mv_one_against_one.m, meta/ft_mv_one_against_rest.m,
	  predictors/ft_mv_blogreg.m, predictors/ft_mv_glmnet.m, predictors/ft_mv_kernelmethod.m,
	  selectors/ft_mv_searchlight.m: glmnet update

2011-05-06 20:59  marvger

	* [r3459] predictors/ft_mv_blogreg.m: blogreg updates

2011-05-06 20:50  marvger

	* [r3458] meta/ft_mv_one_against_one.m, meta/ft_mv_one_against_rest.m,
	  predictors/ft_mv_blogreg.m, predictors/ft_mv_glmnet.m, selectors/ft_mv_searchlight.m:
	  blogreg updates

2011-05-06 10:36  marvger

	* [r3455] meta/ft_mv_ensemble.m, meta/ft_mv_meta.m, timeseries/ft_mv_hmm.m,
	  timeseries/ft_mv_lds.m, timeseries/ft_mv_timeseries.m:

2011-05-05 21:13  marvger

	* [r3451] meta/ft_mv_ensemble.m, statistics/ft_mv_performance.m: balanced accuracy

2011-05-05 21:09  marvger

	* [r3450] external/gerven/utilities, external/gerven/utilities/cartprod.m,
	  external/gerven/utilities/run_parallel.m:

2011-05-05 21:09  marvger

	* [r3449] external/utilities:

2011-05-05 21:08  marvger

	* [r3448] external/murphy/Kalman:

2011-05-05 21:04  marvger

	* [r3447] external/markSchmidt:

2011-05-05 21:02  marvger

	* [r3446] external/PQN:

2011-05-05 21:01  marvger

	* [r3445] external/bahramisharif:

2011-05-05 21:01  marvger

	* [r3444] external/bahramisharif:

2011-05-05 20:58  marvger

	* [r3443] external/bahramisharif/elasticlr.m:

2011-05-05 20:34  marvger

	* [r3442] meta/ft_mv_ensemble.m, meta/ft_mv_gridsearch.m, meta/ft_mv_meta.m,
	  meta/ft_mv_one_against_one.m, meta/ft_mv_one_against_rest.m: meta methods

2011-05-05 20:19  marvger

	* [r3441] meta, predictors/ft_mv_ensemble.m, predictors/ft_mv_gridsearch.m,
	  predictors/ft_mv_one_against_one.m, predictors/ft_mv_one_against_rest.m,
	  timeseries/ft_mv_lik.m: add meta folder to multivariate module

2011-05-05 08:31  marvger

	* [r3440] base/ft_mv_analysis.m, base/ft_mv_method.m, base/ft_mv_ndata.m: multivariate
	  update

2011-05-05 08:10  marvger

	* [r3439] timeseries/ft_mv_lik.m: likelihood based classification

2011-05-05 07:59  marvger

	* [r3438] external/herman/rbf_ker.m, external/herman/rbf_prim.m: ft_mv_rfda code

2011-05-03 21:24  marvger

	* [r3428] statistics/ft_mv_binomial.m, statistics/ft_mv_mcnemar.m:

2011-05-01 11:29  marvger

	* [r3411] statistics/ft_mv_binomial.m, statistics/ft_mv_mcnemar.m: new blogreg and binomial
	  code

2011-04-30 06:46  marvger

	* [r3410] predictors/ft_mv_blogreg.m, preprocessors/ft_mv_csp.m, statistics/69digits.mat,
	  statistics/ft_mv_binomial.m, statistics/ft_mv_mcnemar.m, statistics/ft_mv_significance.m:
	  new blogreg and binomial code

2011-04-05 10:00  marvger

	* [r3286] external/farquhar/tprod/tprod.mexmaci, selectors/ft_mv_filterer.m,
	  selectors/ft_mv_selector.m: filterer voor Frank

2011-03-29 09:20  marvger

	* [r3239] external/murphy/KPMtools/cvs:

2011-03-29 09:16  marvger

	* [r3237] timeseries/ft_mv_hmm.m, timeseries/ft_mv_lds.m:

2011-03-29 08:51  marvger

	* [r3233] external/murphy/KPMtools/.zip, external/murphy/KPMtools/assert.bak,
	  external/murphy/KPMtools/cvs/Entries, external/murphy/KPMtools/cvs/Entries.Extra,
	  external/murphy/KPMtools/cvs/Repository, external/murphy/KPMtools/cvs/Root,
	  external/murphy/KPMtools/isscalar.bak, external/murphy/KPMtools/isvector.bak: removed
	  garbage

2011-03-22 11:30  marvger

	* [r3185] predictors/ft_mv_glmnet.m, preprocessors/ft_mv_whitener.m,
	  statistics/ft_mv_performance.m, timeseries/ft_mv_hmm.m, timeseries/ft_mv_lds.m:
	  ft_mv_performance bug fix

2011-03-07 07:36  marvger

	* [r3064] predictors/ft_mv_one_against_rest.m, timeseries/ft_mv_hmm.m,
	  timeseries/ft_mv_lds.m: bugfree version of linear dynamical system

2011-03-04 16:24  marvger

	* [r3062] selectors/ft_mv_searchlight.m, selectors/ft_mv_selector.m: searchlight update

2011-03-04 15:28  marvger

	* [r3061] external/gerven/pls/sparse_bls.m, predictors/ft_mv_glmnet.m,
	  predictors/ft_mv_one_against_one.m, predictors/ft_mv_one_against_rest.m,
	  selectors/ft_mv_filterer.m, selectors/ft_mv_searchlight.m, timeseries/ft_mv_hmm.m:
	  searchlight update

2011-02-25 07:49  marvger

	* [r2949] selectors/ft_mv_searchlight.m: searchlight update

2011-02-22 15:57  marvger

	* [r2924] predictors/ft_mv_blogreg.m: blogreg support for coupled mixed effects

2011-02-21 13:27  marvger

	* [r2913] predictors/ft_mv_glmnet.m: fixed glmnet bug

2011-02-21 12:42  marvger

	* [r2912] predictors/ft_mv_glmnet.m: fixed glmnet bug

2011-02-21 10:26  marvger

	* [r2911] predictors/ft_mv_glmnet.m, predictors/ft_mv_linreg.m, predictors/ft_mv_logreg.m:
	  linear and logistic regression replaced by glmnet

2011-02-19 13:01  marvger

	* [r2910] external/gerven/gmrflab/laplacedegenerate_ep.m,
	  external/gerven/gmrflab/scale_prior.m, predictors/ft_mv_blogreg.m: multivariate update

2011-02-16 11:44  marvger

	* [r2890] predictors/ft_mv_blogreg.m: blogreg support for transfer learning

2011-02-03 11:00  roboos

	* [r2782] COPYING, external/PQN/KPM/mexutil.c, external/PQN/KPM/mexutil.h,
	  external/PQN/KPM/repmatC.c, external/PQN/UGM/mex/UGM_Infer_ExactC.c,
	  external/PQN/UGM/mex/UGM_Loss_subC.c, external/PQN/UGM/mex/UGM_MRFLoss_subC.c,
	  external/PQN/UGM/mex/UGM_PseudoLossC.c, external/PQN/UGM/mex/UGM_Sample_GibbsC.c,
	  external/PQN/UGM/mex/UGM_common.h, external/PQN/UGM/mex/UGM_makeEdgePotentialsC.c,
	  external/PQN/UGM/mex/UGM_makeNodePotentialsC.c,
	  external/PQN/UGM/mex/UGM_updateGradientC.c, external/PQN/crfChain/crfChain_lossL2C.c,
	  external/PQN/minFunc/lbfgsC.c, external/PQN/project/heap.c, external/PQN/project/heap.h,
	  external/PQN/project/oneProjectorCore.c, external/PQN/project/oneProjectorCore.h,
	  external/PQN/project/projectBlockL1.c, external/PQN/project/projectBlockL2.c,
	  external/PQN/project/projectRandom2C.c, external/farquhar/repop/ddrepop.c,
	  external/farquhar/repop/dsrepop.c, external/farquhar/repop/mxInfo.c,
	  external/farquhar/repop/mxInfo.h, external/farquhar/repop/mxInfo_mex.c,
	  external/farquhar/repop/mxInfo_mex.h, external/farquhar/repop/mxUtils.c,
	  external/farquhar/repop/mxUtils.h, external/farquhar/repop/repop.c,
	  external/farquhar/repop/repop.h, external/farquhar/repop/repop_mex.c,
	  external/farquhar/repop/repop_testcases.c, external/farquhar/repop/repop_util.c,
	  external/farquhar/repop/sdrepop.c, external/farquhar/repop/ssrepop.c,
	  external/farquhar/tprod/ddtprod.c, external/farquhar/tprod/dstprod.c,
	  external/farquhar/tprod/mxInfo.c, external/farquhar/tprod/mxInfo.h,
	  external/farquhar/tprod/mxInfo_mex.c, external/farquhar/tprod/mxInfo_mex.h,
	  external/farquhar/tprod/mxUtils.c, external/farquhar/tprod/mxUtils.h,
	  external/farquhar/tprod/sdtprod.c, external/farquhar/tprod/sstprod.c,
	  external/farquhar/tprod/tprod.c, external/farquhar/tprod/tprod.h,
	  external/farquhar/tprod/tprod_mex.c, external/farquhar/tprod/tprod_testcases.c,
	  external/farquhar/tprod/tprod_util.c, external/gerven/gmrflab/fastinvex.c,
	  external/gerven/gmrflab/fastinvre.c, external/gerven/gmrflab/fastinvre64.c,
	  external/glmnet/MANUAL.txt, external/glmnet/README.txt,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrix.h,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixAddC_InPlace.c,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixBuildC.c,
	  external/markSchmidt/Foreign/Ewout/heap.c, external/markSchmidt/Foreign/Ewout/heap.h,
	  external/markSchmidt/Foreign/Ewout/oneProjectorCore.c,
	  external/markSchmidt/Foreign/Ewout/oneProjectorCore.h,
	  external/markSchmidt/Foreign/Ewout/projectBlockL1.c,
	  external/markSchmidt/Foreign/Ewout/projectBlockL2.c, external/markSchmidt/KPM/max_mult.c,
	  external/markSchmidt/KPM/mexutil.c, external/markSchmidt/KPM/mexutil.h,
	  external/markSchmidt/UGM/mex/UGM_Decode_ExactC.c,
	  external/markSchmidt/UGM/mex/UGM_Decode_ICMC.c,
	  external/markSchmidt/UGM/mex/UGM_Infer_ChainC.c,
	  external/markSchmidt/UGM/mex/UGM_Infer_ExactC.c,
	  external/markSchmidt/UGM/mex/UGM_Infer_LBPC.c,
	  external/markSchmidt/UGM/mex/UGM_Infer_MFC.c,
	  external/markSchmidt/UGM/mex/UGM_Infer_TRBPC.c,
	  external/markSchmidt/UGM/mex/UGM_Loss_subC.c,
	  external/markSchmidt/UGM/mex/UGM_MRFLoss_subC.c,
	  external/markSchmidt/UGM/mex/UGM_PseudoLossC.c,
	  external/markSchmidt/UGM/mex/UGM_Sample_GibbsC.c,
	  external/markSchmidt/UGM/mex/UGM_common.h,
	  external/markSchmidt/UGM/mex/UGM_makeEdgePotentialsC.c,
	  external/markSchmidt/UGM/mex/UGM_makeNodePotentialsC.c,
	  external/markSchmidt/UGM/mex/UGM_updateGradientC.c,
	  external/markSchmidt/crfChain/mex/crfChain_inferC.c,
	  external/markSchmidt/crfChain/mex/crfChain_lossC2.c,
	  external/markSchmidt/crfChain/mex/crfChain_makePotentialsC.c,
	  external/markSchmidt/groupL1/projectRandom2C.c, external/markSchmidt/minFunc/lbfgsC.c,
	  external/markSchmidt/minFunc/mcholC.c, external/murphy/KPMstats/README.txt,
	  external/murphy/KPMstats/chisquared_readme.txt, external/murphy/KPMstats/cwr_readme.txt,
	  external/murphy/KPMstats/parzenC.c, external/murphy/KPMtools/README.txt,
	  external/murphy/KPMtools/colmult.c, external/murphy/KPMtools/ind2subv.c,
	  external/murphy/KPMtools/junk.c, external/murphy/KPMtools/max_mult.c,
	  external/murphy/KPMtools/mexutil.c, external/murphy/KPMtools/mexutil.h,
	  external/murphy/KPMtools/normaliseC.c, external/murphy/KPMtools/rectintLoopC.c,
	  external/murphy/KPMtools/rectintSparseLoopC.c, external/murphy/KPMtools/repmatC.c,
	  external/murphy/KPMtools/subv2ind.c, external/murphy/Kalman/README.txt,
	  external/murphy/hmm/README.txt, external/pca/license.txt: more cleanups on the svn
	  properties

2011-02-03 10:48  roboos

	* [r2781] external/PQN/DuchiEtAl_UAI2008/Algorithm1.m,
	  external/PQN/DuchiEtAl_UAI2008/Algorithm3BlockMatrix.m,
	  external/PQN/DuchiEtAl_UAI2008/initialW.m, external/PQN/DuchiEtAl_UAI2008/traceMatProd.m,
	  external/PQN/GGM/L1precisionBCD_traced.m, external/PQN/GGM/logdet.m,
	  external/PQN/GGM/logdetFunction.m, external/PQN/KPM/drawGraph.m,
	  external/PQN/KPM/mysetdiff.m, external/PQN/KPM/process_options.m,
	  external/PQN/KPM/repmatC.mexglx, external/PQN/KPM/repmatC.mexmac,
	  external/PQN/KPM/repmatC.mexw32, external/PQN/KPM/setdiag.m,
	  external/PQN/KPM/standardizeCols.m, external/PQN/L1General/L1GeneralOrthantWise.m,
	  external/PQN/L1General/L1GeneralProjection.m, external/PQN/L1General/LassoShooting.m,
	  external/PQN/L1General/sub/getSlope.m, external/PQN/L1General/sub/initialStepLength.m,
	  external/PQN/L1General/sub/noProgress.m, external/PQN/L1General/sub/nonNegGrad.m,
	  external/PQN/UGM/infer/UGM_Infer_Exact.m, external/PQN/UGM/mex/UGM_Infer_ExactC.mexglx,
	  external/PQN/UGM/mex/UGM_Infer_ExactC.mexmac,
	  external/PQN/UGM/mex/UGM_Infer_ExactC.mexw32, external/PQN/UGM/mex/UGM_Loss_subC.mexglx,
	  external/PQN/UGM/mex/UGM_Loss_subC.mexmac, external/PQN/UGM/mex/UGM_Loss_subC.mexw32,
	  external/PQN/UGM/mex/UGM_MRFLoss_subC.mexglx,
	  external/PQN/UGM/mex/UGM_MRFLoss_subC.mexw32, external/PQN/UGM/mex/UGM_PseudoLossC.mexglx,
	  external/PQN/UGM/mex/UGM_PseudoLossC.mexmac, external/PQN/UGM/mex/UGM_PseudoLossC.mexw32,
	  external/PQN/UGM/mex/UGM_Sample_GibbsC.mexglx,
	  external/PQN/UGM/mex/UGM_Sample_GibbsC.mexw32,
	  external/PQN/UGM/mex/UGM_makeEdgePotentialsC.mexglx,
	  external/PQN/UGM/mex/UGM_makeEdgePotentialsC.mexmac,
	  external/PQN/UGM/mex/UGM_makeEdgePotentialsC.mexw32,
	  external/PQN/UGM/mex/UGM_makeNodePotentialsC.mexglx,
	  external/PQN/UGM/mex/UGM_makeNodePotentialsC.mexmac,
	  external/PQN/UGM/mex/UGM_makeNodePotentialsC.mexw32,
	  external/PQN/UGM/mex/UGM_updateGradientC.mexglx,
	  external/PQN/UGM/mex/UGM_updateGradientC.mexmac,
	  external/PQN/UGM/mex/UGM_updateGradientC.mexw32,
	  external/PQN/UGM/potentials/UGM_makeNodePotentials.m,
	  external/PQN/UGM/sample/UGM_Sample_Exact.m, external/PQN/UGM/sample/UGM_Sample_Gibbs.m,
	  external/PQN/UGM/structures/fixed_Full.m, external/PQN/UGM/sub/UGM_generate.m,
	  external/PQN/UGM/sub/UGM_initWeights.m, external/PQN/UGM/sub/UGM_makeCRFInfoStruct.m,
	  external/PQN/UGM/sub/UGM_makeCRFNodePotentials.m,
	  external/PQN/UGM/sub/UGM_makeCRFedgePotentials.m,
	  external/PQN/UGM/sub/UGM_makeEdgeFeatures.m, external/PQN/UGM/sub/UGM_makeEdgeStruct.m,
	  external/PQN/UGM/sub/UGM_makeEdgeVE.m, external/PQN/UGM/sub/UGM_makeInfoStruct.m,
	  external/PQN/UGM/sub/UGM_makeMRFInfoStruct.m,
	  external/PQN/UGM/sub/UGM_makeMRFnodePotentials.m, external/PQN/UGM/sub/UGM_splitWeights.m,
	  external/PQN/UGM/train/UGM_CRFpseudoLoss.m, external/PQN/UGM/train/UGM_MRFLoss.m,
	  external/PQN/UGM/train/UGM_PseudoLoss.m, external/PQN/crfChain/crfChain_initSentences.m,
	  external/PQN/crfChain/crfChain_initWeights.m, external/PQN/crfChain/crfChain_lossL2.m,
	  external/PQN/crfChain/crfChain_lossL2C.mexglx,
	  external/PQN/crfChain/crfChain_lossL2C.mexmac,
	  external/PQN/crfChain/crfChain_lossL2C.mexw32, external/PQN/example_PQN.m,
	  external/PQN/expFiles/PQNexp_CRF.m, external/PQN/expFiles/PQNexp_GGM.m,
	  external/PQN/expFiles/PQNexp_GrGGM.m, external/PQN/expFiles/PQNexp_GrGGM2.m,
	  external/PQN/expFiles/PQNexp_MRF.m, external/PQN/expFiles/traceGroupL1.m,
	  external/PQN/expFiles/traceL1.m, external/PQN/groupL1/L1groupGraft.m,
	  external/PQN/groupL1/L1groupMinConF.m, external/PQN/groupL1/auxGroupL2Project.m,
	  external/PQN/groupL1/auxGroupLoss.m, external/PQN/groupL1/getGroupSlope.m,
	  external/PQN/groupL1/groupL2Proj.m, external/PQN/groupL1/groupl1_makeGroupPointers.m,
	  external/PQN/lossFuncs/LogisticLoss.m,
	  external/PQN/lossFuncs/MeanFieldGibbsFreeEnergyLoss.m, external/PQN/lossFuncs/SSVMLoss.m,
	  external/PQN/lossFuncs/SimultaneousLogisticLoss.m,
	  external/PQN/lossFuncs/SimultaneousSquaredError.m, external/PQN/lossFuncs/SoftmaxLoss2.m,
	  external/PQN/lossFuncs/SquaredError.m, external/PQN/lossFuncs/dualSVMLoss.m,
	  external/PQN/lossFuncs/kernelLinear.m, external/PQN/lossFuncs/overLassoLoss.m,
	  external/PQN/lossFuncs/penalizedL2.m, external/PQN/mexAll.m,
	  external/PQN/minConF/minConF_PQN.m, external/PQN/minConF/minConF_SPG.m,
	  external/PQN/minFunc/ArmijoBacktrack.m, external/PQN/minFunc/WolfeLineSearch.m,
	  external/PQN/minFunc/isLegal.m, external/PQN/minFunc/lbfgsC.mexglx,
	  external/PQN/minFunc/lbfgsC.mexmac, external/PQN/minFunc/lbfgsC.mexw32,
	  external/PQN/minFunc/lbfgsHvFunc2.m, external/PQN/minFunc/lbfgsUpdate.m,
	  external/PQN/minFunc/minFunc.m, external/PQN/minFunc/minFunc_processInputOptions.m,
	  external/PQN/minFunc/polyinterp.m, external/PQN/misc/assignWords.m,
	  external/PQN/misc/ispd.m, external/PQN/misc/myProcessOptions.m,
	  external/PQN/misc/mylogsumexp.m, external/PQN/misc/prettyPlot.m,
	  external/PQN/misc/runningMin.m, external/PQN/misc/sampleDiscrete.m,
	  external/PQN/plotAll.m, external/PQN/plotFiles/PQNexp_CRF_plot.m,
	  external/PQN/plotFiles/PQNexp_GGM_plot.m, external/PQN/plotFiles/PQNexp_GrGGM2_plot.m,
	  external/PQN/plotFiles/PQNexp_GrGGM_plot.m, external/PQN/plotFiles/PQNexp_MRF_plot.m,
	  external/PQN/project/MeanFieldGibbsFreeEnergyProject.m,
	  external/PQN/project/auxGroupLinfProject.m, external/PQN/project/boundProject.m,
	  external/PQN/project/complexProject.m, external/PQN/project/dualSVMproject.m,
	  external/PQN/project/groupLinfProj.m, external/PQN/project/makeIndices.m,
	  external/PQN/project/projectBlockL1.mexglx, external/PQN/project/projectBlockL1.mexw32,
	  external/PQN/project/projectBlockL2.mexglx, external/PQN/project/projectBlockL2.mexw32,
	  external/PQN/project/projectLinf1.m, external/PQN/project/projectLinf1BlockFast.m,
	  external/PQN/project/projectLinf1BlockMatrix.m, external/PQN/project/projectLinf2.m,
	  external/PQN/project/projectRandom2.m, external/PQN/project/projectRandom2C.mexglx,
	  external/PQN/project/projectRandom2C.mexw32, external/PQN/project/projectSimplex.m,
	  external/PQN/runAll.m, external/PQN/runSmall.m, external/farquhar/repop/repop.mexmac,
	  external/farquhar/tprod/tprod.mexa64, external/farquhar/tprod/tprod.mexmac,
	  external/farquhar/whiten.m, external/gerven/gmrflab/fastinv.mexglx,
	  external/gerven/gmrflab/fastinvex.mexglx, external/gerven/gmrflab/fastinvre.mexglx,
	  external/gerven/gmrflab/fastinvre64.mexa64, external/gerven/gmrflab/fastinvre64.mexglx,
	  external/markSchmidt/DAGlearn/DAGsearch.m, external/markSchmidt/DAGlearn/L1MB.m,
	  external/markSchmidt/DAGlearn/L1MBI.m, external/markSchmidt/DAGlearn/OrderSearch.m,
	  external/markSchmidt/DAGlearn/OrderSearchDAGEvaluate.m,
	  external/markSchmidt/DAGlearn/OrderSearchGetAdjacency.m,
	  external/markSchmidt/DAGlearn/OrderSearchGetSwapParams.m,
	  external/markSchmidt/DAGlearn/OrderSearch_sub.m,
	  external/markSchmidt/DAGlearn/SparseCandidate.m,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixAdd.m,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixAddC_InPlace.mexglx,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixAddC_InPlace.mexmac,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixAddC_InPlace.mexw32,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixBuild.m,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixBuildC.mexglx,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixBuildC.mexmac,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixBuildC.mexw32,
	  external/markSchmidt/DAGlearn/data/getDAGalarm.m,
	  external/markSchmidt/DAGlearn/data/getDAGbarley.m,
	  external/markSchmidt/DAGlearn/data/getDAGcarpo.m,
	  external/markSchmidt/DAGlearn/data/getDAGchain.m,
	  external/markSchmidt/DAGlearn/data/getDAGfactors.m,
	  external/markSchmidt/DAGlearn/data/getDAGhailfinder.m,
	  external/markSchmidt/DAGlearn/data/getDAGinsurance.m,
	  external/markSchmidt/DAGlearn/data/getDAGmildew.m,
	  external/markSchmidt/DAGlearn/data/getDAGwater.m,
	  external/markSchmidt/DAGlearn/data/sampleNetwork.m,
	  external/markSchmidt/DAGlearn/example_DAGlearn.m,
	  external/markSchmidt/DAGlearn/sub/GLoss.m, external/markSchmidt/DAGlearn/sub/LLoss.m,
	  external/markSchmidt/DAGlearn/sub/makeDummy.m, external/markSchmidt/DAGlearn/sub/score.m,
	  external/markSchmidt/Foreign/Ewout/logdetFunction.m,
	  external/markSchmidt/Foreign/Ewout/projectBlockL1.mexglx,
	  external/markSchmidt/Foreign/Ewout/projectBlockL1.mexmac,
	  external/markSchmidt/Foreign/Ewout/projectBlockL1.mexw32,
	  external/markSchmidt/Foreign/Ewout/projectBlockL2.mexglx,
	  external/markSchmidt/Foreign/Ewout/projectBlockL2.mexmac,
	  external/markSchmidt/Foreign/Ewout/projectBlockL2.mexw32,
	  external/markSchmidt/Foreign/Ewout/projectLinf1.m,
	  external/markSchmidt/Foreign/Ewout/projectLinf2.m,
	  external/markSchmidt/Foreign/GraphLayout/arrow.m,
	  external/markSchmidt/Foreign/GraphLayout/draw_layout.m,
	  external/markSchmidt/Foreign/GraphLayout/make_layout.m,
	  external/markSchmidt/Foreign/GraphLayout/textbox.m,
	  external/markSchmidt/Foreign/GraphLayout/toposort.m, external/markSchmidt/Foreign/lars.m,
	  external/markSchmidt/Foreign/minimize.m, external/markSchmidt/Foreign/randraw.m,
	  external/markSchmidt/Foreign/rosenbrock.m, external/markSchmidt/Foreign/vline.m,
	  external/markSchmidt/KPM/chowliu.m, external/markSchmidt/KPM/compute_counts.m,
	  external/markSchmidt/KPM/drawGraph.m, external/markSchmidt/KPM/max_mult.mexglx,
	  external/markSchmidt/KPM/max_mult.mexmac, external/markSchmidt/KPM/max_mult.mexw32,
	  external/markSchmidt/KPM/mwst.m, external/markSchmidt/KPM/myreshape.m,
	  external/markSchmidt/KPM/mysetdiff.m, external/markSchmidt/KPM/process_options.m,
	  external/markSchmidt/KPM/setdiag.m, external/markSchmidt/KPM/standardizeCols.m,
	  external/markSchmidt/KPM/subsets1.m, external/markSchmidt/KPM/subv2ind.m,
	  external/markSchmidt/KPM/suptitle.m, external/markSchmidt/KPM/treeloglik.m,
	  external/markSchmidt/L1General/L1GeneralCoordinateDescent.m,
	  external/markSchmidt/L1General/L1GeneralGrafting.m,
	  external/markSchmidt/L1General/L1GeneralIteratedRidge.m,
	  external/markSchmidt/L1General/L1GeneralOrthantWise.m,
	  external/markSchmidt/L1General/L1GeneralPatternSearch.m,
	  external/markSchmidt/L1General/L1GeneralPrimalDualLogBarrier.m,
	  external/markSchmidt/L1General/L1GeneralProjectedSubGradient.m,
	  external/markSchmidt/L1General/L1GeneralProjectedSubGradientBB.m,
	  external/markSchmidt/L1General/L1GeneralProjection.m,
	  external/markSchmidt/L1General/L1GeneralSequentialQuadraticProgramming.m,
	  external/markSchmidt/L1General/L1GeneralSubGradient.m,
	  external/markSchmidt/L1General/L1GeneralUnconstrainedApx.m,
	  external/markSchmidt/L1General/L1GeneralUnconstrainedApx_sub.m,
	  external/markSchmidt/L1General/L1General_examples.m,
	  external/markSchmidt/L1General/example_L1General.m,
	  external/markSchmidt/L1General/sub/bfgsUpdate.m,
	  external/markSchmidt/L1General/sub/epsilonL1.m,
	  external/markSchmidt/L1General/sub/getSlope.m,
	  external/markSchmidt/L1General/sub/initialStepLength.m,
	  external/markSchmidt/L1General/sub/logBarrierNonNeg.m,
	  external/markSchmidt/L1General/sub/noProgress.m,
	  external/markSchmidt/L1General/sub/nonNegGrad.m,
	  external/markSchmidt/L1General/sub/sigmoidL1.m,
	  external/markSchmidt/L1General/sub/solveNewton.m,
	  external/markSchmidt/L1precision/L1precisionBCD.m,
	  external/markSchmidt/L1precision/example_L1precision.m,
	  external/markSchmidt/L1precision/sparsePrecisionObj.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_AlphaBetaSwap.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_AlphaExpansion.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_Block_ICM.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_Chain.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_Conditional.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_Cutset.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_Exact.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_GraphCut.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_Greedy.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_ICM.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_ICMrestart.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_IntProg.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_LBP.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_LinProg.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_MaxOfMarginals.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_Sample.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_TRBP.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_Tree.m,
	  external/markSchmidt/UGM/examples/example_UGM_AlphaBeta.m,
	  external/markSchmidt/UGM/examples/example_UGM_Block.m,
	  external/markSchmidt/UGM/examples/example_UGM_Chain.m,
	  external/markSchmidt/UGM/examples/example_UGM_Condition.m,
	  external/markSchmidt/UGM/examples/example_UGM_Cutset.m,
	  external/markSchmidt/UGM/examples/example_UGM_GraphCuts.m,
	  external/markSchmidt/UGM/examples/example_UGM_ICM.m,
	  external/markSchmidt/UGM/examples/example_UGM_Linprog.m,
	  external/markSchmidt/UGM/examples/example_UGM_MCMC.m,
	  external/markSchmidt/UGM/examples/example_UGM_Small.m,
	  external/markSchmidt/UGM/examples/example_UGM_TrainApprox.m,
	  external/markSchmidt/UGM/examples/example_UGM_TrainCRF.m,
	  external/markSchmidt/UGM/examples/example_UGM_TrainMRF.m,
	  external/markSchmidt/UGM/examples/example_UGM_TrainSGD.m,
	  external/markSchmidt/UGM/examples/example_UGM_Tree.m,
	  external/markSchmidt/UGM/examples/example_UGM_Variational.m,
	  external/markSchmidt/UGM/examples/getNoisyX.m,
	  external/markSchmidt/UGM/examples/getNoisyX2.m,
	  external/markSchmidt/UGM/examples/getNoisyXsmall.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_Block_MF.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_Chain.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_Conditional.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_Cutset.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_Exact.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_LBP.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_MeanField.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_Sample.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_TRBP.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_Tree.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_ViterbiApx.m,
	  external/markSchmidt/UGM/mex/UGM_Decode_ExactC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Decode_ExactC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_Decode_ExactC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_Decode_ICMC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Decode_ICMC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_Decode_ICMC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_Infer_ChainC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Infer_ChainC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_Infer_ChainC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_Infer_ExactC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Infer_ExactC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_Infer_ExactC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_Infer_LBPC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Infer_LBPC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_Infer_LBPC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_Infer_MFC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Infer_MFC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_Infer_MFC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_Infer_TRBPC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Infer_TRBPC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_Loss_subC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Loss_subC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_Loss_subC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_MRFLoss_subC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_MRFLoss_subC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_MRFLoss_subC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_PseudoLossC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_PseudoLossC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_PseudoLossC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_Sample_GibbsC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Sample_GibbsC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_Sample_GibbsC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_makeEdgePotentialsC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_makeEdgePotentialsC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_makeEdgePotentialsC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_makeNodePotentialsC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_makeNodePotentialsC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_makeNodePotentialsC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_updateGradientC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_updateGradientC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_updateGradientC.mexw32,
	  external/markSchmidt/UGM/misc/UGM_ChainFwd.m,
	  external/markSchmidt/UGM/misc/UGM_ConfigurationPotential.m,
	  external/markSchmidt/UGM/misc/UGM_LogConfigurationPotential.m,
	  external/markSchmidt/UGM/misc/UGM_LoopyBP.m, external/markSchmidt/UGM/misc/UGM_TRBP.m,
	  external/markSchmidt/UGM/misc/UGM_TreeBP.m, external/markSchmidt/UGM/misc/UGM_VE2adj.m,
	  external/markSchmidt/UGM/misc/UGM_generate.m,
	  external/markSchmidt/UGM/misc/UGM_makeClampedPotentials.m,
	  external/markSchmidt/UGM/misc/UGM_makeEdgeStruct.m,
	  external/markSchmidt/UGM/misc/UGM_makeEdgeVE.m,
	  external/markSchmidt/UGM/sample/UGM_Sample_Block_Gibbs.m,
	  external/markSchmidt/UGM/sample/UGM_Sample_Chain.m,
	  external/markSchmidt/UGM/sample/UGM_Sample_Conditional.m,
	  external/markSchmidt/UGM/sample/UGM_Sample_Cutset.m,
	  external/markSchmidt/UGM/sample/UGM_Sample_Exact.m,
	  external/markSchmidt/UGM/sample/UGM_Sample_Gibbs.m,
	  external/markSchmidt/UGM/sample/UGM_Sample_Tree.m,
	  external/markSchmidt/UGM/sample/UGM_Sample_VarMCMC.m,
	  external/markSchmidt/UGM/struct/chainAdjMatrix.m,
	  external/markSchmidt/UGM/struct/fullAdjMatrix.m,
	  external/markSchmidt/UGM/struct/latticeAdjMatrix.m,
	  external/markSchmidt/UGM/train/UGM_CRFLoss.m,
	  external/markSchmidt/UGM/train/UGM_CRFpseudoLoss.m,
	  external/markSchmidt/UGM/train/UGM_MRFLoss.m,
	  external/markSchmidt/UGM/train/UGM_initWeights.m,
	  external/markSchmidt/UGM/train/UGM_makeCRFEdgePotentials.m,
	  external/markSchmidt/UGM/train/UGM_makeCRFInfoStruct.m,
	  external/markSchmidt/UGM/train/UGM_makeCRFNodePotentials.m,
	  external/markSchmidt/UGM/train/UGM_makeEdgeFeatures.m,
	  external/markSchmidt/UGM/train/UGM_makeEdgeFeaturesInvAbsDif.m,
	  external/markSchmidt/UGM/train/UGM_makeMRFInfoStruct.m,
	  external/markSchmidt/UGM/train/UGM_makeMRFedgePotentials.m,
	  external/markSchmidt/UGM/train/UGM_makeMRFnodePotentials.m,
	  external/markSchmidt/UGM/train/UGM_splitWeights.m,
	  external/markSchmidt/UGM/train/UGM_standardizeCols.m,
	  external/markSchmidt/UGMlearn/example_UGMlearn.m,
	  external/markSchmidt/UGMlearn/example_UGMlearnSub.m,
	  external/markSchmidt/blogreg/Mlogist2Sample2.m,
	  external/markSchmidt/blogreg/example_LogRegRJSamp.m,
	  external/markSchmidt/blogreg/example_LogRegSamp.m,
	  external/markSchmidt/blogreg/example_MultLogRegSamp.m,
	  external/markSchmidt/blogreg/example_ProbRegSamp.m,
	  external/markSchmidt/blogreg/example_blogreg.m,
	  external/markSchmidt/blogreg/logist2Sample.m,
	  external/markSchmidt/blogreg/logist2Sample2.m,
	  external/markSchmidt/blogreg/logist2SampleMH.m,
	  external/markSchmidt/blogreg/logist2SamplePredict.m,
	  external/markSchmidt/blogreg/logist2_FS_Sample.m,
	  external/markSchmidt/blogreg/probit2GibbsSample.m,
	  external/markSchmidt/blogreg/probit2Sample.m,
	  external/markSchmidt/blogreg/sub/logisticInversecdf.m,
	  external/markSchmidt/blogreg/sub/sampleLambda.m,
	  external/markSchmidt/blogreg/sub/sampleLogisticInd.m,
	  external/markSchmidt/blogreg/sub/samplingFromOneSideTruncatedNormal.m,
	  external/markSchmidt/crfChain/crfChain_decode.m,
	  external/markSchmidt/crfChain/crfChain_error.m,
	  external/markSchmidt/crfChain/crfChain_genSynthetic.m,
	  external/markSchmidt/crfChain/crfChain_infer.m,
	  external/markSchmidt/crfChain/crfChain_initSentences.m,
	  external/markSchmidt/crfChain/crfChain_initWeights.m,
	  external/markSchmidt/crfChain/crfChain_loss.m,
	  external/markSchmidt/crfChain/crfChain_makePotentials.m,
	  external/markSchmidt/crfChain/crfChain_sample.m,
	  external/markSchmidt/crfChain/crfChain_splitWeights.m,
	  external/markSchmidt/crfChain/example_crfChain.m,
	  external/markSchmidt/crfChain/mex/crfChain_inferC.mexglx,
	  external/markSchmidt/crfChain/mex/crfChain_inferC.mexmac,
	  external/markSchmidt/crfChain/mex/crfChain_inferC.mexw32,
	  external/markSchmidt/crfChain/mex/crfChain_lossC2.mexglx,
	  external/markSchmidt/crfChain/mex/crfChain_lossC2.mexmac,
	  external/markSchmidt/crfChain/mex/crfChain_lossC2.mexw32,
	  external/markSchmidt/crfChain/mex/crfChain_makePotentialsC.mexglx,
	  external/markSchmidt/crfChain/mex/crfChain_makePotentialsC.mexmac,
	  external/markSchmidt/crfChain/mex/crfChain_makePotentialsC.mexw32,
	  external/markSchmidt/groupL1/L1groupSPG.m,
	  external/markSchmidt/groupL1/auxGroupL2Project.m,
	  external/markSchmidt/groupL1/auxGroupLinfProject.m,
	  external/markSchmidt/groupL1/auxGroupLoss.m,
	  external/markSchmidt/groupL1/complexProject.m,
	  external/markSchmidt/groupL1/example_groupL1.m,
	  external/markSchmidt/groupL1/example_groupLassoPath.m,
	  external/markSchmidt/groupL1/groupL1regularizer.m,
	  external/markSchmidt/groupL1/groupL2Proj.m, external/markSchmidt/groupL1/groupLinfProj.m,
	  external/markSchmidt/groupL1/groupSoftThreshold.m,
	  external/markSchmidt/groupL1/groupl1_makeGroupPointers.m,
	  external/markSchmidt/groupL1/overLassoLoss.m,
	  external/markSchmidt/groupL1/projectRandom2.m,
	  external/markSchmidt/groupL1/projectRandom2C.mexglx,
	  external/markSchmidt/groupL1/projectRandom2C.mexmac,
	  external/markSchmidt/groupL1/projectRandom2C.mexw32,
	  external/markSchmidt/lasso/LassoActiveSet.m,
	  external/markSchmidt/lasso/LassoBlockCoordinate.m,
	  external/markSchmidt/lasso/LassoConstrained.m,
	  external/markSchmidt/lasso/LassoGaussSeidel.m, external/markSchmidt/lasso/LassoGrafting.m,
	  external/markSchmidt/lasso/LassoIteratedRidge.m,
	  external/markSchmidt/lasso/LassoIterativeSoftThresholding.m,
	  external/markSchmidt/lasso/LassoLARS.m,
	  external/markSchmidt/lasso/LassoNonNegativeSquared.m,
	  external/markSchmidt/lasso/LassoPrimalDualLogBarrier.m,
	  external/markSchmidt/lasso/LassoProjection.m, external/markSchmidt/lasso/LassoShooting.m,
	  external/markSchmidt/lasso/LassoSignConstraints.m,
	  external/markSchmidt/lasso/LassoSubGradient.m,
	  external/markSchmidt/lasso/LassoUnconstrainedApx.m,
	  external/markSchmidt/lasso/computeSlope.m, external/markSchmidt/lasso/computeViol.m,
	  external/markSchmidt/lasso/example_lasso.m,
	  external/markSchmidt/lasso/example_lasso_warmStart.m,
	  external/markSchmidt/logreg/L2LogReg_IRLS.m, external/markSchmidt/lossFuncs/HuberLoss.m,
	  external/markSchmidt/lossFuncs/LogisticDiagPrecond.m,
	  external/markSchmidt/lossFuncs/LogisticHv.m,
	  external/markSchmidt/lossFuncs/LogisticLoss.m,
	  external/markSchmidt/lossFuncs/MLPbinaryLoss.m,
	  external/markSchmidt/lossFuncs/MLPregressionLoss.m,
	  external/markSchmidt/lossFuncs/MLPregressionLoss_efficient.m,
	  external/markSchmidt/lossFuncs/MLPregressionPredict.m,
	  external/markSchmidt/lossFuncs/MLPregressionPredict_efficient.m,
	  external/markSchmidt/lossFuncs/MeanFieldGibbsFreeEnergyLoss.m,
	  external/markSchmidt/lossFuncs/MeanFieldGibbsFreeEnergyProject.m,
	  external/markSchmidt/lossFuncs/ProbitLoss.m, external/markSchmidt/lossFuncs/SSVMLoss.m,
	  external/markSchmidt/lossFuncs/SSVMMultiLoss.m, external/markSchmidt/lossFuncs/SSVRLoss.m,
	  external/markSchmidt/lossFuncs/SimultaneousLogisticLoss.m,
	  external/markSchmidt/lossFuncs/SimultaneousSquaredError.m,
	  external/markSchmidt/lossFuncs/SoftmaxLoss2.m,
	  external/markSchmidt/lossFuncs/SquaredError.m,
	  external/markSchmidt/lossFuncs/dualSVMLoss.m,
	  external/markSchmidt/lossFuncs/dualSVMproject.m,
	  external/markSchmidt/lossFuncs/kernelLinear.m,
	  external/markSchmidt/lossFuncs/kernelPoly.m, external/markSchmidt/lossFuncs/kernelRBF.m,
	  external/markSchmidt/lossFuncs/penalizedKernelL2.m,
	  external/markSchmidt/lossFuncs/penalizedKernelL2_matrix.m,
	  external/markSchmidt/lossFuncs/penalizedL2.m, external/markSchmidt/mexAll.m,
	  external/markSchmidt/minConf/PQN_examples.m, external/markSchmidt/minConf/boundProject.m,
	  external/markSchmidt/minConf/example_minConf.m,
	  external/markSchmidt/minConf/linearProject.m, external/markSchmidt/minConf/minConf_BBST.m,
	  external/markSchmidt/minConf/minConf_PQN.m, external/markSchmidt/minConf/minConf_SPG.m,
	  external/markSchmidt/minConf/minConf_TMP.m, external/markSchmidt/minConf/projectSimplex.m,
	  external/markSchmidt/minFunc/ArmijoBacktrack.m,
	  external/markSchmidt/minFunc/WolfeLineSearch.m,
	  external/markSchmidt/minFunc/autoDiff/autoGrad.m,
	  external/markSchmidt/minFunc/autoDiff/autoHess.m,
	  external/markSchmidt/minFunc/autoDiff/autoHv.m,
	  external/markSchmidt/minFunc/autoDiff/autoTensor.m,
	  external/markSchmidt/minFunc/callOutput.m, external/markSchmidt/minFunc/conjGrad.m,
	  external/markSchmidt/minFunc/dampedUpdate.m,
	  external/markSchmidt/minFunc/derivativeCheck.m,
	  external/markSchmidt/minFunc/example_minFunc.m,
	  external/markSchmidt/minFunc/example_minFunc_LR.m, external/markSchmidt/minFunc/isLegal.m,
	  external/markSchmidt/minFunc/lbfgs.m, external/markSchmidt/minFunc/lbfgsC.mexa64,
	  external/markSchmidt/minFunc/lbfgsC.mexglx, external/markSchmidt/minFunc/lbfgsC.mexmac,
	  external/markSchmidt/minFunc/lbfgsC.mexw32, external/markSchmidt/minFunc/lbfgsC.mexw64,
	  external/markSchmidt/minFunc/lbfgsHvFunc2.m, external/markSchmidt/minFunc/lbfgsUpdate.m,
	  external/markSchmidt/minFunc/mchol.m, external/markSchmidt/minFunc/mcholC.mexglx,
	  external/markSchmidt/minFunc/mcholC.mexmac, external/markSchmidt/minFunc/mcholC.mexw32,
	  external/markSchmidt/minFunc/mcholC.mexw64, external/markSchmidt/minFunc/mcholinc.m,
	  external/markSchmidt/minFunc/minFunc.m, external/markSchmidt/minFunc/minFunc_examples.m,
	  external/markSchmidt/minFunc/minFunc_processInputOptions.m,
	  external/markSchmidt/minFunc/polyinterp.m, external/markSchmidt/minFunc/precondDiag.m,
	  external/markSchmidt/minFunc/precondTriu.m,
	  external/markSchmidt/minFunc/precondTriuDiag.m,
	  external/markSchmidt/minFunc/taylorModel.m, external/markSchmidt/misc/getColorsRGB.m,
	  external/markSchmidt/misc/ispd.m, external/markSchmidt/misc/makeData.m,
	  external/markSchmidt/misc/minSpan.m, external/markSchmidt/misc/myProcessOptions.m,
	  external/markSchmidt/misc/mylogsumexp.m, external/markSchmidt/misc/plotClassifier.m,
	  external/markSchmidt/misc/prepare_housing.m, external/markSchmidt/misc/prettyPlot.m,
	  external/markSchmidt/misc/sampleDiscrete.m, external/markSchmidt/misc/twos_threes.m,
	  external/murphy/KPMstats/parzenC.dll, external/murphy/KPMstats/parzenC.mexglx,
	  external/murphy/KPMtools/colmult.mexglx, external/murphy/KPMtools/normaliseC.dll,
	  external/murphy/KPMtools/rectintLoopC.dll, external/murphy/KPMtools/rectintLoopC.mexglx,
	  external/murphy/KPMtools/rectintSparseLoopC.dll, external/murphy/KPMtools/repmatC.dll,
	  external/murphy/KPMtools/repmatC.mexglx, predictors/ft_mv_one_against_one.m,
	  predictors/ft_mv_one_against_rest.m, statistics/ft_mv_test.m: cleanup of the special
	  properties of all files, such as execute property, eol-style and keywords

2011-02-01 11:44  marvger

	* [r2729] external/gerven/gmrflab/laplacedegenerate_ep.m, predictors/ft_mv_blogreg.m,
	  predictors/ft_mv_glmnet.m, statistics/ft_mv_performance.m,
	  statistics/ft_mv_significance.m, statistics/ft_mv_test.m: aanpassingen Philip

2011-01-13 13:15  marvger

	* [r2578] predictors/ft_mv_glmnet.m: lambdapath for glmnet

2011-01-13 11:46  marvger

	* [r2576] predictors/ft_mv_glmnet.m: lambdapath for glmnet

2011-01-05 14:12  eelspa

	* [r2528] external/PQN/KPM/drawGraph.m, external/PQN/KPM/process_options.m,
	  external/markSchmidt/KPM/drawGraph.m, external/markSchmidt/KPM/process_options.m,
	  external/murphy/KPMtools/process_options.m:

2011-01-03 15:25  marvger

	* [r2524] predictors/ft_mv_glmnet.m: one against

2010-12-17 16:41  marvger

	* [r2467] selectors/ft_mv_searchlight.m: searchlight

2010-12-17 16:36  marvger

	* [r2466] selectors/ft_mv_searchlight.m: searchlight

2010-12-17 16:36  marvger

	* [r2465] predictors/ft_mv_logreg.m: searchlight

2010-12-15 13:34  marvger

	* [r2436] predictors/ft_mv_logreg.m, statistics/ft_mv_performance.m,
	  statistics/ft_mv_test.m, timeseries/ft_mv_hmm.m: ft_mv_logreg

2010-12-15 12:53  marvger

	* [r2434] predictors/ft_mv_logreg.m: ft_mv_logreg

2010-12-14 20:59  marvger

	* [r2420] predictors/ft_mv_blogreg.m, predictors/ft_mv_gridsearch.m: blogreg

2010-12-14 12:10  marvger

	* [r2409] external/markSchmidt/mac, external/markSchmidt/mac/UGM_Decode_ExactC.mexmaci,
	  external/markSchmidt/mac/UGM_Decode_ICMC.mexmaci,
	  external/markSchmidt/mac/UGM_Infer_ChainC.mexmaci,
	  external/markSchmidt/mac/UGM_Infer_ExactC.mexmaci,
	  external/markSchmidt/mac/UGM_Infer_LBPC.mexmaci,
	  external/markSchmidt/mac/UGM_Infer_MFC.mexmaci,
	  external/markSchmidt/mac/UGM_Loss_subC.mexmaci,
	  external/markSchmidt/mac/UGM_MRFLoss_subC.mexmaci,
	  external/markSchmidt/mac/UGM_PseudoLossC.mexmaci,
	  external/markSchmidt/mac/UGM_Sample_GibbsC.mexmaci,
	  external/markSchmidt/mac/UGM_makeEdgePotentialsC.mexmaci,
	  external/markSchmidt/mac/UGM_makeNodePotentialsC.mexmaci,
	  external/markSchmidt/mac/UGM_updateGradientC.mexmaci,
	  external/markSchmidt/mac/ancestorMatrixAddC_InPlace.mexmaci,
	  external/markSchmidt/mac/ancestorMatrixBuildC.mexmaci,
	  external/markSchmidt/mac/crfChain_inferC.mexmaci,
	  external/markSchmidt/mac/crfChain_lossC2.mexmaci,
	  external/markSchmidt/mac/crfChain_makePotentialsC.mexmaci,
	  external/markSchmidt/mac/lbfgsC.mexmaci, external/markSchmidt/mac/max_mult.mexmaci,
	  external/markSchmidt/mac/mcholC.mexmaci, external/markSchmidt/mac/projectBlockL1.mexmaci,
	  external/markSchmidt/mac/projectBlockL2.mexmaci,
	  external/markSchmidt/mac/projectRandom2C.mexmaci: added mex files for mac

2010-12-14 12:06  marvger

	* [r2408] external/PQN, external/PQN/DuchiEtAl_UAI2008,
	  external/PQN/DuchiEtAl_UAI2008/Algorithm1.m,
	  external/PQN/DuchiEtAl_UAI2008/Algorithm3BlockMatrix.m,
	  external/PQN/DuchiEtAl_UAI2008/initialW.m, external/PQN/DuchiEtAl_UAI2008/traceMatProd.m,
	  external/PQN/GGM, external/PQN/GGM/L1precisionBCD_traced.m, external/PQN/GGM/logdet.m,
	  external/PQN/GGM/logdetFunction.m, external/PQN/KPM, external/PQN/KPM/drawGraph.m,
	  external/PQN/KPM/mexutil.c, external/PQN/KPM/mexutil.h, external/PQN/KPM/mysetdiff.m,
	  external/PQN/KPM/process_options.m, external/PQN/KPM/repmatC.c,
	  external/PQN/KPM/repmatC.mexglx, external/PQN/KPM/repmatC.mexmac,
	  external/PQN/KPM/repmatC.mexw32, external/PQN/KPM/setdiag.m,
	  external/PQN/KPM/standardizeCols.m, external/PQN/L1General,
	  external/PQN/L1General/L1GeneralOrthantWise.m,
	  external/PQN/L1General/L1GeneralProjection.m, external/PQN/L1General/LassoShooting.m,
	  external/PQN/L1General/sub, external/PQN/L1General/sub/getSlope.m,
	  external/PQN/L1General/sub/initialStepLength.m, external/PQN/L1General/sub/noProgress.m,
	  external/PQN/L1General/sub/nonNegGrad.m, external/PQN/UGM, external/PQN/UGM/infer,
	  external/PQN/UGM/infer/UGM_Infer_Exact.m, external/PQN/UGM/mex,
	  external/PQN/UGM/mex/UGM_Infer_ExactC.c, external/PQN/UGM/mex/UGM_Infer_ExactC.mexglx,
	  external/PQN/UGM/mex/UGM_Infer_ExactC.mexmac,
	  external/PQN/UGM/mex/UGM_Infer_ExactC.mexw32, external/PQN/UGM/mex/UGM_Loss_subC.c,
	  external/PQN/UGM/mex/UGM_Loss_subC.mexglx, external/PQN/UGM/mex/UGM_Loss_subC.mexmac,
	  external/PQN/UGM/mex/UGM_Loss_subC.mexw32, external/PQN/UGM/mex/UGM_MRFLoss_subC.c,
	  external/PQN/UGM/mex/UGM_MRFLoss_subC.mexglx,
	  external/PQN/UGM/mex/UGM_MRFLoss_subC.mexw32, external/PQN/UGM/mex/UGM_PseudoLossC.c,
	  external/PQN/UGM/mex/UGM_PseudoLossC.mexglx, external/PQN/UGM/mex/UGM_PseudoLossC.mexmac,
	  external/PQN/UGM/mex/UGM_PseudoLossC.mexw32, external/PQN/UGM/mex/UGM_Sample_GibbsC.c,
	  external/PQN/UGM/mex/UGM_Sample_GibbsC.mexglx,
	  external/PQN/UGM/mex/UGM_Sample_GibbsC.mexw32, external/PQN/UGM/mex/UGM_common.h,
	  external/PQN/UGM/mex/UGM_makeEdgePotentialsC.c,
	  external/PQN/UGM/mex/UGM_makeEdgePotentialsC.mexglx,
	  external/PQN/UGM/mex/UGM_makeEdgePotentialsC.mexmac,
	  external/PQN/UGM/mex/UGM_makeEdgePotentialsC.mexw32,
	  external/PQN/UGM/mex/UGM_makeNodePotentialsC.c,
	  external/PQN/UGM/mex/UGM_makeNodePotentialsC.mexglx,
	  external/PQN/UGM/mex/UGM_makeNodePotentialsC.mexmac,
	  external/PQN/UGM/mex/UGM_makeNodePotentialsC.mexw32,
	  external/PQN/UGM/mex/UGM_updateGradientC.c,
	  external/PQN/UGM/mex/UGM_updateGradientC.mexglx,
	  external/PQN/UGM/mex/UGM_updateGradientC.mexmac,
	  external/PQN/UGM/mex/UGM_updateGradientC.mexw32, external/PQN/UGM/potentials,
	  external/PQN/UGM/potentials/UGM_makeNodePotentials.m, external/PQN/UGM/sample,
	  external/PQN/UGM/sample/UGM_Sample_Exact.m, external/PQN/UGM/sample/UGM_Sample_Gibbs.m,
	  external/PQN/UGM/structures, external/PQN/UGM/structures/fixed_Full.m,
	  external/PQN/UGM/sub, external/PQN/UGM/sub/UGM_generate.m,
	  external/PQN/UGM/sub/UGM_initWeights.m, external/PQN/UGM/sub/UGM_makeCRFInfoStruct.m,
	  external/PQN/UGM/sub/UGM_makeCRFNodePotentials.m,
	  external/PQN/UGM/sub/UGM_makeCRFedgePotentials.m,
	  external/PQN/UGM/sub/UGM_makeEdgeFeatures.m, external/PQN/UGM/sub/UGM_makeEdgeStruct.m,
	  external/PQN/UGM/sub/UGM_makeEdgeVE.m, external/PQN/UGM/sub/UGM_makeInfoStruct.m,
	  external/PQN/UGM/sub/UGM_makeMRFInfoStruct.m,
	  external/PQN/UGM/sub/UGM_makeMRFnodePotentials.m, external/PQN/UGM/sub/UGM_splitWeights.m,
	  external/PQN/UGM/train, external/PQN/UGM/train/UGM_CRFpseudoLoss.m,
	  external/PQN/UGM/train/UGM_MRFLoss.m, external/PQN/UGM/train/UGM_PseudoLoss.m,
	  external/PQN/crfChain, external/PQN/crfChain/crfChain_initSentences.m,
	  external/PQN/crfChain/crfChain_initWeights.m, external/PQN/crfChain/crfChain_lossL2.m,
	  external/PQN/crfChain/crfChain_lossL2C.c, external/PQN/crfChain/crfChain_lossL2C.mexglx,
	  external/PQN/crfChain/crfChain_lossL2C.mexmac,
	  external/PQN/crfChain/crfChain_lossL2C.mexw32, external/PQN/dataFiles,
	  external/PQN/dataFiles/20news_w100.mat, external/PQN/dataFiles/wordData.mat,
	  external/PQN/example_PQN.m, external/PQN/expFiles, external/PQN/expFiles/PQNexp_CRF.m,
	  external/PQN/expFiles/PQNexp_GGM.m, external/PQN/expFiles/PQNexp_GrGGM.m,
	  external/PQN/expFiles/PQNexp_GrGGM2.m, external/PQN/expFiles/PQNexp_MRF.m,
	  external/PQN/expFiles/traceGroupL1.m, external/PQN/expFiles/traceL1.m,
	  external/PQN/groupL1, external/PQN/groupL1/L1groupGraft.m,
	  external/PQN/groupL1/L1groupMinConF.m, external/PQN/groupL1/auxGroupL2Project.m,
	  external/PQN/groupL1/auxGroupLoss.m, external/PQN/groupL1/getGroupSlope.m,
	  external/PQN/groupL1/groupL2Proj.m, external/PQN/groupL1/groupl1_makeGroupPointers.m,
	  external/PQN/lossFuncs, external/PQN/lossFuncs/LogisticLoss.m,
	  external/PQN/lossFuncs/MeanFieldGibbsFreeEnergyLoss.m, external/PQN/lossFuncs/SSVMLoss.m,
	  external/PQN/lossFuncs/SimultaneousLogisticLoss.m,
	  external/PQN/lossFuncs/SimultaneousSquaredError.m, external/PQN/lossFuncs/SoftmaxLoss2.m,
	  external/PQN/lossFuncs/SquaredError.m, external/PQN/lossFuncs/dualSVMLoss.m,
	  external/PQN/lossFuncs/kernelLinear.m, external/PQN/lossFuncs/overLassoLoss.m,
	  external/PQN/lossFuncs/penalizedL2.m, external/PQN/mexAll.m, external/PQN/minConF,
	  external/PQN/minConF/minConF_PQN.m, external/PQN/minConF/minConF_SPG.m,
	  external/PQN/minFunc, external/PQN/minFunc/ArmijoBacktrack.m,
	  external/PQN/minFunc/WolfeLineSearch.m, external/PQN/minFunc/isLegal.m,
	  external/PQN/minFunc/lbfgsC.c, external/PQN/minFunc/lbfgsC.mexglx,
	  external/PQN/minFunc/lbfgsC.mexmac, external/PQN/minFunc/lbfgsC.mexw32,
	  external/PQN/minFunc/lbfgsHvFunc2.m, external/PQN/minFunc/lbfgsUpdate.m,
	  external/PQN/minFunc/minFunc.m, external/PQN/minFunc/minFunc_processInputOptions.m,
	  external/PQN/minFunc/polyinterp.m, external/PQN/misc, external/PQN/misc/assignWords.m,
	  external/PQN/misc/ispd.m, external/PQN/misc/myProcessOptions.m,
	  external/PQN/misc/mylogsumexp.m, external/PQN/misc/prettyPlot.m,
	  external/PQN/misc/runningMin.m, external/PQN/misc/sampleDiscrete.m,
	  external/PQN/plotAll.m, external/PQN/plotFiles, external/PQN/plotFiles/PQNexp_CRF_plot.m,
	  external/PQN/plotFiles/PQNexp_GGM_plot.m, external/PQN/plotFiles/PQNexp_GrGGM2_plot.m,
	  external/PQN/plotFiles/PQNexp_GrGGM_plot.m, external/PQN/plotFiles/PQNexp_MRF_plot.m,
	  external/PQN/project, external/PQN/project/MeanFieldGibbsFreeEnergyProject.m,
	  external/PQN/project/auxGroupLinfProject.m, external/PQN/project/boundProject.m,
	  external/PQN/project/complexProject.m, external/PQN/project/dualSVMproject.m,
	  external/PQN/project/groupLinfProj.m, external/PQN/project/heap.c,
	  external/PQN/project/heap.h, external/PQN/project/makeIndices.m,
	  external/PQN/project/oneProjectorCore.c, external/PQN/project/oneProjectorCore.h,
	  external/PQN/project/projectBlockL1.c, external/PQN/project/projectBlockL1.mexglx,
	  external/PQN/project/projectBlockL1.mexw32, external/PQN/project/projectBlockL2.c,
	  external/PQN/project/projectBlockL2.mexglx, external/PQN/project/projectBlockL2.mexw32,
	  external/PQN/project/projectLinf1.m, external/PQN/project/projectLinf1BlockFast.m,
	  external/PQN/project/projectLinf1BlockMatrix.m, external/PQN/project/projectLinf2.m,
	  external/PQN/project/projectRandom2.m, external/PQN/project/projectRandom2C.c,
	  external/PQN/project/projectRandom2C.mexglx, external/PQN/project/projectRandom2C.mexw32,
	  external/PQN/project/projectSimplex.m, external/PQN/resultFiles,
	  external/PQN/resultFiles/PQNexp_CRF_1_1_8936_19.mat,
	  external/PQN/resultFiles/PQNexp_GGM_1_0.100000_50.mat,
	  external/PQN/resultFiles/PQNexp_GrGGM2_1_50.mat,
	  external/PQN/resultFiles/PQNexp_GrGGM_1_0.100000_50.mat,
	  external/PQN/resultFiles/PQNexp_MRF_1_5400_10.000000_50_exact.mat, external/PQN/runAll.m,
	  external/PQN/runSmall.m, external/markSchmidt, external/markSchmidt/DAGlearn,
	  external/markSchmidt/DAGlearn/DAGsearch.m, external/markSchmidt/DAGlearn/L1MB.m,
	  external/markSchmidt/DAGlearn/L1MBI.m, external/markSchmidt/DAGlearn/OrderSearch.m,
	  external/markSchmidt/DAGlearn/OrderSearchDAGEvaluate.m,
	  external/markSchmidt/DAGlearn/OrderSearchGetAdjacency.m,
	  external/markSchmidt/DAGlearn/OrderSearchGetSwapParams.m,
	  external/markSchmidt/DAGlearn/OrderSearch_sub.m,
	  external/markSchmidt/DAGlearn/SparseCandidate.m,
	  external/markSchmidt/DAGlearn/ancestorMatrix,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrix.h,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixAdd.m,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixAddC_InPlace.c,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixAddC_InPlace.mexglx,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixAddC_InPlace.mexmac,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixAddC_InPlace.mexw32,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixBuild.m,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixBuildC.c,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixBuildC.mexglx,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixBuildC.mexmac,
	  external/markSchmidt/DAGlearn/ancestorMatrix/ancestorMatrixBuildC.mexw32,
	  external/markSchmidt/DAGlearn/data, external/markSchmidt/DAGlearn/data/getDAGalarm.m,
	  external/markSchmidt/DAGlearn/data/getDAGbarley.m,
	  external/markSchmidt/DAGlearn/data/getDAGcarpo.m,
	  external/markSchmidt/DAGlearn/data/getDAGchain.m,
	  external/markSchmidt/DAGlearn/data/getDAGfactors.m,
	  external/markSchmidt/DAGlearn/data/getDAGhailfinder.m,
	  external/markSchmidt/DAGlearn/data/getDAGinsurance.m,
	  external/markSchmidt/DAGlearn/data/getDAGmildew.m,
	  external/markSchmidt/DAGlearn/data/getDAGwater.m,
	  external/markSchmidt/DAGlearn/data/sampleNetwork.m,
	  external/markSchmidt/DAGlearn/example_DAGlearn.m, external/markSchmidt/DAGlearn/sub,
	  external/markSchmidt/DAGlearn/sub/GLoss.m, external/markSchmidt/DAGlearn/sub/LLoss.m,
	  external/markSchmidt/DAGlearn/sub/makeDummy.m, external/markSchmidt/DAGlearn/sub/score.m,
	  external/markSchmidt/Foreign, external/markSchmidt/Foreign/Ewout,
	  external/markSchmidt/Foreign/Ewout/heap.c, external/markSchmidt/Foreign/Ewout/heap.h,
	  external/markSchmidt/Foreign/Ewout/logdetFunction.m,
	  external/markSchmidt/Foreign/Ewout/oneProjectorCore.c,
	  external/markSchmidt/Foreign/Ewout/oneProjectorCore.h,
	  external/markSchmidt/Foreign/Ewout/projectBlockL1.c,
	  external/markSchmidt/Foreign/Ewout/projectBlockL1.mexglx,
	  external/markSchmidt/Foreign/Ewout/projectBlockL1.mexmac,
	  external/markSchmidt/Foreign/Ewout/projectBlockL1.mexw32,
	  external/markSchmidt/Foreign/Ewout/projectBlockL2.c,
	  external/markSchmidt/Foreign/Ewout/projectBlockL2.mexglx,
	  external/markSchmidt/Foreign/Ewout/projectBlockL2.mexmac,
	  external/markSchmidt/Foreign/Ewout/projectBlockL2.mexw32,
	  external/markSchmidt/Foreign/Ewout/projectLinf1.m,
	  external/markSchmidt/Foreign/Ewout/projectLinf2.m,
	  external/markSchmidt/Foreign/GraphLayout,
	  external/markSchmidt/Foreign/GraphLayout/arrow.m,
	  external/markSchmidt/Foreign/GraphLayout/draw_layout.m,
	  external/markSchmidt/Foreign/GraphLayout/make_layout.m,
	  external/markSchmidt/Foreign/GraphLayout/textbox.m,
	  external/markSchmidt/Foreign/GraphLayout/toposort.m, external/markSchmidt/Foreign/lars.m,
	  external/markSchmidt/Foreign/minimize.m, external/markSchmidt/Foreign/randraw.m,
	  external/markSchmidt/Foreign/rosenbrock.m, external/markSchmidt/Foreign/vline.m,
	  external/markSchmidt/KPM, external/markSchmidt/KPM/chowliu.m,
	  external/markSchmidt/KPM/compute_counts.m, external/markSchmidt/KPM/drawGraph.m,
	  external/markSchmidt/KPM/max_mult.c, external/markSchmidt/KPM/max_mult.mexglx,
	  external/markSchmidt/KPM/max_mult.mexmac, external/markSchmidt/KPM/max_mult.mexw32,
	  external/markSchmidt/KPM/mexutil.c, external/markSchmidt/KPM/mexutil.h,
	  external/markSchmidt/KPM/mwst.m, external/markSchmidt/KPM/myreshape.m,
	  external/markSchmidt/KPM/mysetdiff.m, external/markSchmidt/KPM/process_options.m,
	  external/markSchmidt/KPM/setdiag.m, external/markSchmidt/KPM/standardizeCols.m,
	  external/markSchmidt/KPM/subsets1.m, external/markSchmidt/KPM/subv2ind.m,
	  external/markSchmidt/KPM/suptitle.m, external/markSchmidt/KPM/treeloglik.m,
	  external/markSchmidt/L1General,
	  external/markSchmidt/L1General/L1GeneralCoordinateDescent.m,
	  external/markSchmidt/L1General/L1GeneralGrafting.m,
	  external/markSchmidt/L1General/L1GeneralIteratedRidge.m,
	  external/markSchmidt/L1General/L1GeneralOrthantWise.m,
	  external/markSchmidt/L1General/L1GeneralPatternSearch.m,
	  external/markSchmidt/L1General/L1GeneralPrimalDualLogBarrier.m,
	  external/markSchmidt/L1General/L1GeneralProjectedSubGradient.m,
	  external/markSchmidt/L1General/L1GeneralProjectedSubGradientBB.m,
	  external/markSchmidt/L1General/L1GeneralProjection.m,
	  external/markSchmidt/L1General/L1GeneralSequentialQuadraticProgramming.m,
	  external/markSchmidt/L1General/L1GeneralSubGradient.m,
	  external/markSchmidt/L1General/L1GeneralUnconstrainedApx.m,
	  external/markSchmidt/L1General/L1GeneralUnconstrainedApx_sub.m,
	  external/markSchmidt/L1General/L1General_examples.m,
	  external/markSchmidt/L1General/example_L1General.m, external/markSchmidt/L1General/sub,
	  external/markSchmidt/L1General/sub/bfgsUpdate.m,
	  external/markSchmidt/L1General/sub/epsilonL1.m,
	  external/markSchmidt/L1General/sub/getSlope.m,
	  external/markSchmidt/L1General/sub/initialStepLength.m,
	  external/markSchmidt/L1General/sub/logBarrierNonNeg.m,
	  external/markSchmidt/L1General/sub/noProgress.m,
	  external/markSchmidt/L1General/sub/nonNegGrad.m,
	  external/markSchmidt/L1General/sub/sigmoidL1.m,
	  external/markSchmidt/L1General/sub/solveNewton.m, external/markSchmidt/L1precision,
	  external/markSchmidt/L1precision/L1precisionBCD.m,
	  external/markSchmidt/L1precision/example_L1precision.m,
	  external/markSchmidt/L1precision/sparsePrecisionObj.m, external/markSchmidt/UGM,
	  external/markSchmidt/UGM/decode,
	  external/markSchmidt/UGM/decode/UGM_Decode_AlphaBetaSwap.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_AlphaExpansion.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_Block_ICM.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_Chain.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_Conditional.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_Cutset.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_Exact.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_GraphCut.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_Greedy.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_ICM.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_ICMrestart.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_IntProg.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_LBP.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_LinProg.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_MaxOfMarginals.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_Sample.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_TRBP.m,
	  external/markSchmidt/UGM/decode/UGM_Decode_Tree.m, external/markSchmidt/UGM/examples,
	  external/markSchmidt/UGM/examples/example_UGM_AlphaBeta.m,
	  external/markSchmidt/UGM/examples/example_UGM_Block.m,
	  external/markSchmidt/UGM/examples/example_UGM_Chain.m,
	  external/markSchmidt/UGM/examples/example_UGM_Condition.m,
	  external/markSchmidt/UGM/examples/example_UGM_Cutset.m,
	  external/markSchmidt/UGM/examples/example_UGM_GraphCuts.m,
	  external/markSchmidt/UGM/examples/example_UGM_ICM.m,
	  external/markSchmidt/UGM/examples/example_UGM_Linprog.m,
	  external/markSchmidt/UGM/examples/example_UGM_MCMC.m,
	  external/markSchmidt/UGM/examples/example_UGM_Small.m,
	  external/markSchmidt/UGM/examples/example_UGM_TrainApprox.m,
	  external/markSchmidt/UGM/examples/example_UGM_TrainCRF.m,
	  external/markSchmidt/UGM/examples/example_UGM_TrainMRF.m,
	  external/markSchmidt/UGM/examples/example_UGM_TrainSGD.m,
	  external/markSchmidt/UGM/examples/example_UGM_Tree.m,
	  external/markSchmidt/UGM/examples/example_UGM_Variational.m,
	  external/markSchmidt/UGM/examples/getNoisyX.m,
	  external/markSchmidt/UGM/examples/getNoisyX2.m,
	  external/markSchmidt/UGM/examples/getNoisyXsmall.m,
	  external/markSchmidt/UGM/examples/waterSystem.mat,
	  external/markSchmidt/UGM/examples/waterSystem2.mat, external/markSchmidt/UGM/infer,
	  external/markSchmidt/UGM/infer/UGM_Infer_Block_MF.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_Chain.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_Conditional.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_Cutset.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_Exact.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_LBP.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_MeanField.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_Sample.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_TRBP.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_Tree.m,
	  external/markSchmidt/UGM/infer/UGM_Infer_ViterbiApx.m, external/markSchmidt/UGM/mex,
	  external/markSchmidt/UGM/mex/UGM_Decode_ExactC.c,
	  external/markSchmidt/UGM/mex/UGM_Decode_ExactC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Decode_ExactC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_Decode_ExactC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_Decode_ICMC.c,
	  external/markSchmidt/UGM/mex/UGM_Decode_ICMC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Decode_ICMC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_Decode_ICMC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_Infer_ChainC.c,
	  external/markSchmidt/UGM/mex/UGM_Infer_ChainC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Infer_ChainC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_Infer_ChainC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_Infer_ExactC.c,
	  external/markSchmidt/UGM/mex/UGM_Infer_ExactC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Infer_ExactC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_Infer_ExactC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_Infer_LBPC.c,
	  external/markSchmidt/UGM/mex/UGM_Infer_LBPC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Infer_LBPC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_Infer_LBPC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_Infer_MFC.c,
	  external/markSchmidt/UGM/mex/UGM_Infer_MFC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Infer_MFC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_Infer_MFC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_Infer_TRBPC.c,
	  external/markSchmidt/UGM/mex/UGM_Infer_TRBPC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Infer_TRBPC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_Loss_subC.c,
	  external/markSchmidt/UGM/mex/UGM_Loss_subC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Loss_subC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_Loss_subC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_MRFLoss_subC.c,
	  external/markSchmidt/UGM/mex/UGM_MRFLoss_subC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_MRFLoss_subC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_MRFLoss_subC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_PseudoLossC.c,
	  external/markSchmidt/UGM/mex/UGM_PseudoLossC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_PseudoLossC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_PseudoLossC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_Sample_GibbsC.c,
	  external/markSchmidt/UGM/mex/UGM_Sample_GibbsC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_Sample_GibbsC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_Sample_GibbsC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_common.h,
	  external/markSchmidt/UGM/mex/UGM_makeEdgePotentialsC.c,
	  external/markSchmidt/UGM/mex/UGM_makeEdgePotentialsC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_makeEdgePotentialsC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_makeEdgePotentialsC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_makeNodePotentialsC.c,
	  external/markSchmidt/UGM/mex/UGM_makeNodePotentialsC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_makeNodePotentialsC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_makeNodePotentialsC.mexw32,
	  external/markSchmidt/UGM/mex/UGM_updateGradientC.c,
	  external/markSchmidt/UGM/mex/UGM_updateGradientC.mexglx,
	  external/markSchmidt/UGM/mex/UGM_updateGradientC.mexmac,
	  external/markSchmidt/UGM/mex/UGM_updateGradientC.mexw32, external/markSchmidt/UGM/misc,
	  external/markSchmidt/UGM/misc/UGM_ChainFwd.m,
	  external/markSchmidt/UGM/misc/UGM_ConfigurationPotential.m,
	  external/markSchmidt/UGM/misc/UGM_LogConfigurationPotential.m,
	  external/markSchmidt/UGM/misc/UGM_LoopyBP.m, external/markSchmidt/UGM/misc/UGM_TRBP.m,
	  external/markSchmidt/UGM/misc/UGM_TreeBP.m, external/markSchmidt/UGM/misc/UGM_VE2adj.m,
	  external/markSchmidt/UGM/misc/UGM_generate.m,
	  external/markSchmidt/UGM/misc/UGM_makeClampedPotentials.m,
	  external/markSchmidt/UGM/misc/UGM_makeEdgeStruct.m,
	  external/markSchmidt/UGM/misc/UGM_makeEdgeVE.m, external/markSchmidt/UGM/sample,
	  external/markSchmidt/UGM/sample/UGM_Sample_Block_Gibbs.m,
	  external/markSchmidt/UGM/sample/UGM_Sample_Chain.m,
	  external/markSchmidt/UGM/sample/UGM_Sample_Conditional.m,
	  external/markSchmidt/UGM/sample/UGM_Sample_Cutset.m,
	  external/markSchmidt/UGM/sample/UGM_Sample_Exact.m,
	  external/markSchmidt/UGM/sample/UGM_Sample_Gibbs.m,
	  external/markSchmidt/UGM/sample/UGM_Sample_Tree.m,
	  external/markSchmidt/UGM/sample/UGM_Sample_VarMCMC.m, external/markSchmidt/UGM/struct,
	  external/markSchmidt/UGM/struct/chainAdjMatrix.m,
	  external/markSchmidt/UGM/struct/fullAdjMatrix.m,
	  external/markSchmidt/UGM/struct/latticeAdjMatrix.m, external/markSchmidt/UGM/train,
	  external/markSchmidt/UGM/train/UGM_CRFLoss.m,
	  external/markSchmidt/UGM/train/UGM_CRFpseudoLoss.m,
	  external/markSchmidt/UGM/train/UGM_MRFLoss.m,
	  external/markSchmidt/UGM/train/UGM_initWeights.m,
	  external/markSchmidt/UGM/train/UGM_makeCRFEdgePotentials.m,
	  external/markSchmidt/UGM/train/UGM_makeCRFInfoStruct.m,
	  external/markSchmidt/UGM/train/UGM_makeCRFNodePotentials.m,
	  external/markSchmidt/UGM/train/UGM_makeEdgeFeatures.m,
	  external/markSchmidt/UGM/train/UGM_makeEdgeFeaturesInvAbsDif.m,
	  external/markSchmidt/UGM/train/UGM_makeMRFInfoStruct.m,
	  external/markSchmidt/UGM/train/UGM_makeMRFedgePotentials.m,
	  external/markSchmidt/UGM/train/UGM_makeMRFnodePotentials.m,
	  external/markSchmidt/UGM/train/UGM_splitWeights.m,
	  external/markSchmidt/UGM/train/UGM_standardizeCols.m, external/markSchmidt/UGMlearn,
	  external/markSchmidt/UGMlearn/example_UGMlearn.m,
	  external/markSchmidt/UGMlearn/example_UGMlearnSub.m, external/markSchmidt/blogreg,
	  external/markSchmidt/blogreg/Mlogist2Sample2.m,
	  external/markSchmidt/blogreg/example_LogRegRJSamp.m,
	  external/markSchmidt/blogreg/example_LogRegSamp.m,
	  external/markSchmidt/blogreg/example_MultLogRegSamp.m,
	  external/markSchmidt/blogreg/example_ProbRegSamp.m,
	  external/markSchmidt/blogreg/example_blogreg.m,
	  external/markSchmidt/blogreg/logist2Sample.m,
	  external/markSchmidt/blogreg/logist2Sample2.m,
	  external/markSchmidt/blogreg/logist2SampleMH.m,
	  external/markSchmidt/blogreg/logist2SamplePredict.m,
	  external/markSchmidt/blogreg/logist2_FS_Sample.m,
	  external/markSchmidt/blogreg/probit2GibbsSample.m,
	  external/markSchmidt/blogreg/probit2Sample.m, external/markSchmidt/blogreg/sub,
	  external/markSchmidt/blogreg/sub/logisticInversecdf.m,
	  external/markSchmidt/blogreg/sub/sampleLambda.m,
	  external/markSchmidt/blogreg/sub/sampleLogisticInd.m,
	  external/markSchmidt/blogreg/sub/samplingFromOneSideTruncatedNormal.m,
	  external/markSchmidt/crfChain, external/markSchmidt/crfChain/crfChain_decode.m,
	  external/markSchmidt/crfChain/crfChain_error.m,
	  external/markSchmidt/crfChain/crfChain_genSynthetic.m,
	  external/markSchmidt/crfChain/crfChain_infer.m,
	  external/markSchmidt/crfChain/crfChain_initSentences.m,
	  external/markSchmidt/crfChain/crfChain_initWeights.m,
	  external/markSchmidt/crfChain/crfChain_loss.m,
	  external/markSchmidt/crfChain/crfChain_makePotentials.m,
	  external/markSchmidt/crfChain/crfChain_sample.m,
	  external/markSchmidt/crfChain/crfChain_splitWeights.m,
	  external/markSchmidt/crfChain/example_crfChain.m, external/markSchmidt/crfChain/mex,
	  external/markSchmidt/crfChain/mex/crfChain_inferC.c,
	  external/markSchmidt/crfChain/mex/crfChain_inferC.mexglx,
	  external/markSchmidt/crfChain/mex/crfChain_inferC.mexmac,
	  external/markSchmidt/crfChain/mex/crfChain_inferC.mexw32,
	  external/markSchmidt/crfChain/mex/crfChain_lossC2.c,
	  external/markSchmidt/crfChain/mex/crfChain_lossC2.mexglx,
	  external/markSchmidt/crfChain/mex/crfChain_lossC2.mexmac,
	  external/markSchmidt/crfChain/mex/crfChain_lossC2.mexw32,
	  external/markSchmidt/crfChain/mex/crfChain_makePotentialsC.c,
	  external/markSchmidt/crfChain/mex/crfChain_makePotentialsC.mexglx,
	  external/markSchmidt/crfChain/mex/crfChain_makePotentialsC.mexmac,
	  external/markSchmidt/crfChain/mex/crfChain_makePotentialsC.mexw32,
	  external/markSchmidt/data, external/markSchmidt/data/binary,
	  external/markSchmidt/data/binary/20news_w100.mat,
	  external/markSchmidt/data/binary/rain.mat, external/markSchmidt/data/classificationBinary,
	  external/markSchmidt/data/classificationBinary/digits.mat,
	  external/markSchmidt/data/classificationBinary/statlog.heart.data,
	  external/markSchmidt/data/classificationBinary/uci.ionosphere.data,
	  external/markSchmidt/data/regression, external/markSchmidt/data/regression/housing.data,
	  external/markSchmidt/groupL1, external/markSchmidt/groupL1/L1groupSPG.m,
	  external/markSchmidt/groupL1/auxGroupL2Project.m,
	  external/markSchmidt/groupL1/auxGroupLinfProject.m,
	  external/markSchmidt/groupL1/auxGroupLoss.m,
	  external/markSchmidt/groupL1/complexProject.m,
	  external/markSchmidt/groupL1/example_groupL1.m,
	  external/markSchmidt/groupL1/example_groupLassoPath.m,
	  external/markSchmidt/groupL1/groupL1regularizer.m,
	  external/markSchmidt/groupL1/groupL2Proj.m, external/markSchmidt/groupL1/groupLinfProj.m,
	  external/markSchmidt/groupL1/groupSoftThreshold.m,
	  external/markSchmidt/groupL1/groupl1_makeGroupPointers.m,
	  external/markSchmidt/groupL1/overLassoLoss.m,
	  external/markSchmidt/groupL1/projectRandom2.m,
	  external/markSchmidt/groupL1/projectRandom2C.c,
	  external/markSchmidt/groupL1/projectRandom2C.mexglx,
	  external/markSchmidt/groupL1/projectRandom2C.mexmac,
	  external/markSchmidt/groupL1/projectRandom2C.mexw32, external/markSchmidt/lasso,
	  external/markSchmidt/lasso/LassoActiveSet.m,
	  external/markSchmidt/lasso/LassoBlockCoordinate.m,
	  external/markSchmidt/lasso/LassoConstrained.m,
	  external/markSchmidt/lasso/LassoGaussSeidel.m, external/markSchmidt/lasso/LassoGrafting.m,
	  external/markSchmidt/lasso/LassoIteratedRidge.m,
	  external/markSchmidt/lasso/LassoIterativeSoftThresholding.m,
	  external/markSchmidt/lasso/LassoLARS.m,
	  external/markSchmidt/lasso/LassoNonNegativeSquared.m,
	  external/markSchmidt/lasso/LassoPrimalDualLogBarrier.m,
	  external/markSchmidt/lasso/LassoProjection.m, external/markSchmidt/lasso/LassoShooting.m,
	  external/markSchmidt/lasso/LassoSignConstraints.m,
	  external/markSchmidt/lasso/LassoSubGradient.m,
	  external/markSchmidt/lasso/LassoUnconstrainedApx.m,
	  external/markSchmidt/lasso/computeSlope.m, external/markSchmidt/lasso/computeViol.m,
	  external/markSchmidt/lasso/example_lasso.m,
	  external/markSchmidt/lasso/example_lasso_warmStart.m, external/markSchmidt/logreg,
	  external/markSchmidt/logreg/L2LogReg_IRLS.m, external/markSchmidt/lossFuncs,
	  external/markSchmidt/lossFuncs/HuberLoss.m,
	  external/markSchmidt/lossFuncs/LogisticDiagPrecond.m,
	  external/markSchmidt/lossFuncs/LogisticHv.m,
	  external/markSchmidt/lossFuncs/LogisticLoss.m,
	  external/markSchmidt/lossFuncs/MLPbinaryLoss.m,
	  external/markSchmidt/lossFuncs/MLPregressionLoss.m,
	  external/markSchmidt/lossFuncs/MLPregressionLoss_efficient.m,
	  external/markSchmidt/lossFuncs/MLPregressionPredict.m,
	  external/markSchmidt/lossFuncs/MLPregressionPredict_efficient.m,
	  external/markSchmidt/lossFuncs/MeanFieldGibbsFreeEnergyLoss.m,
	  external/markSchmidt/lossFuncs/MeanFieldGibbsFreeEnergyProject.m,
	  external/markSchmidt/lossFuncs/ProbitLoss.m, external/markSchmidt/lossFuncs/SSVMLoss.m,
	  external/markSchmidt/lossFuncs/SSVMMultiLoss.m, external/markSchmidt/lossFuncs/SSVRLoss.m,
	  external/markSchmidt/lossFuncs/SimultaneousLogisticLoss.m,
	  external/markSchmidt/lossFuncs/SimultaneousSquaredError.m,
	  external/markSchmidt/lossFuncs/SoftmaxLoss2.m,
	  external/markSchmidt/lossFuncs/SquaredError.m,
	  external/markSchmidt/lossFuncs/dualSVMLoss.m,
	  external/markSchmidt/lossFuncs/dualSVMproject.m,
	  external/markSchmidt/lossFuncs/kernelLinear.m,
	  external/markSchmidt/lossFuncs/kernelPoly.m, external/markSchmidt/lossFuncs/kernelRBF.m,
	  external/markSchmidt/lossFuncs/penalizedKernelL2.m,
	  external/markSchmidt/lossFuncs/penalizedKernelL2_matrix.m,
	  external/markSchmidt/lossFuncs/penalizedL2.m, external/markSchmidt/mexAll.m,
	  external/markSchmidt/minConf, external/markSchmidt/minConf/PQN_examples.m,
	  external/markSchmidt/minConf/boundProject.m,
	  external/markSchmidt/minConf/example_minConf.m,
	  external/markSchmidt/minConf/linearProject.m, external/markSchmidt/minConf/minConf_BBST.m,
	  external/markSchmidt/minConf/minConf_PQN.m, external/markSchmidt/minConf/minConf_SPG.m,
	  external/markSchmidt/minConf/minConf_TMP.m, external/markSchmidt/minConf/projectSimplex.m,
	  external/markSchmidt/minFunc, external/markSchmidt/minFunc/ArmijoBacktrack.m,
	  external/markSchmidt/minFunc/WolfeLineSearch.m, external/markSchmidt/minFunc/autoDiff,
	  external/markSchmidt/minFunc/autoDiff/autoGrad.m,
	  external/markSchmidt/minFunc/autoDiff/autoHess.m,
	  external/markSchmidt/minFunc/autoDiff/autoHv.m,
	  external/markSchmidt/minFunc/autoDiff/autoTensor.m,
	  external/markSchmidt/minFunc/callOutput.m, external/markSchmidt/minFunc/conjGrad.m,
	  external/markSchmidt/minFunc/dampedUpdate.m,
	  external/markSchmidt/minFunc/derivativeCheck.m,
	  external/markSchmidt/minFunc/example_minFunc.m,
	  external/markSchmidt/minFunc/example_minFunc_LR.m, external/markSchmidt/minFunc/isLegal.m,
	  external/markSchmidt/minFunc/lbfgs.m, external/markSchmidt/minFunc/lbfgsC.c,
	  external/markSchmidt/minFunc/lbfgsC.mexa64, external/markSchmidt/minFunc/lbfgsC.mexglx,
	  external/markSchmidt/minFunc/lbfgsC.mexmac, external/markSchmidt/minFunc/lbfgsC.mexmaci,
	  external/markSchmidt/minFunc/lbfgsC.mexmaci64, external/markSchmidt/minFunc/lbfgsC.mexw32,
	  external/markSchmidt/minFunc/lbfgsC.mexw64, external/markSchmidt/minFunc/lbfgsHvFunc2.m,
	  external/markSchmidt/minFunc/lbfgsUpdate.m, external/markSchmidt/minFunc/mchol.m,
	  external/markSchmidt/minFunc/mcholC.c, external/markSchmidt/minFunc/mcholC.mexglx,
	  external/markSchmidt/minFunc/mcholC.mexmac, external/markSchmidt/minFunc/mcholC.mexmaci64,
	  external/markSchmidt/minFunc/mcholC.mexw32, external/markSchmidt/minFunc/mcholC.mexw64,
	  external/markSchmidt/minFunc/mcholinc.m, external/markSchmidt/minFunc/minFunc.m,
	  external/markSchmidt/minFunc/minFunc_examples.m,
	  external/markSchmidt/minFunc/minFunc_processInputOptions.m,
	  external/markSchmidt/minFunc/polyinterp.m, external/markSchmidt/minFunc/precondDiag.m,
	  external/markSchmidt/minFunc/precondTriu.m,
	  external/markSchmidt/minFunc/precondTriuDiag.m,
	  external/markSchmidt/minFunc/taylorModel.m, external/markSchmidt/misc,
	  external/markSchmidt/misc/X.PNG, external/markSchmidt/misc/X.mat,
	  external/markSchmidt/misc/getColorsRGB.m, external/markSchmidt/misc/ispd.m,
	  external/markSchmidt/misc/makeData.m, external/markSchmidt/misc/minSpan.m,
	  external/markSchmidt/misc/myProcessOptions.m, external/markSchmidt/misc/mylogsumexp.m,
	  external/markSchmidt/misc/plotClassifier.m, external/markSchmidt/misc/prepare_housing.m,
	  external/markSchmidt/misc/prettyPlot.m, external/markSchmidt/misc/sampleDiscrete.m,
	  external/markSchmidt/misc/twos_threes.m, external/markSchmidt/misc/wordData.mat: added
	  external toolbox for multivariate analysis

2010-12-14 12:05  marvger

	* [r2407] external/L1General: mva

2010-12-14 12:04  marvger

	* [r2406] external/L1General/L1General/L1GeneralProjection.m: mva

2010-12-14 12:04  marvger

	* [r2405] external/L1General/L1General/sub: mva

2010-12-14 12:03  marvger

	* [r2404] external/L1General/L1General/sub/initialStepLength.m,
	  external/L1General/L1General/sub/noProgress.m,
	  external/L1General/L1General/sub/nonNegGrad.m,
	  external/L1General/L1General/sub/solveNewton.m: mva

2010-12-14 12:03  marvger

	* [r2403] external/L1General/KPM: mva

2010-12-14 12:02  marvger

	* [r2402] external/L1General/KPM/drawGraph.m, external/L1General/KPM/mexutil.c,
	  external/L1General/KPM/mexutil.h, external/L1General/KPM/repmatC.c,
	  external/L1General/KPM/repmatC.dll, external/L1General/KPM/repmatC.mexa64,
	  external/L1General/KPM/repmatC.mexglx, external/L1General/KPM/repmatC.mexmac,
	  external/L1General/KPM/repmatC.mexmaci, external/L1General/KPM/repmatC.mexmaci64,
	  external/L1General/KPM/setdiag.m, external/L1General/KPM/standardizeCols.m: mva

2010-12-07 12:13  marvger

	* [r2315] statistics/69digits.mat, statistics/ft_mv_test.m: mv

2010-12-07 12:12  marvger

	* [r2314] doc: mv

2010-12-07 12:09  marvger

	* [r2313] doc/figures: mv

2010-12-07 11:52  marvger

	* [r2312] doc/manual.aux, doc/manual.bbl, doc/manual.blg, doc/manual.log, doc/manual.pdf,
	  doc/manual.synctex.gz, doc/manual.tex: mv

2010-12-07 11:52  marvger

	* [r2311] doc/figures/classes.eps, doc/figures/classes.graffle, doc/figures/classes.pdf,
	  doc/figures/organization.eps, doc/figures/organization.graffle,
	  doc/figures/organization.pdf: mv

2010-12-07 11:51  marvger

	* [r2310] examples: mv

2010-12-07 11:50  marvger

	* [r2309] examples/69digits.mat, examples/ft_mv_test.m: mv

2010-12-07 11:45  marvger

	* [r2308] predictors/ft_mv_glmnet.m, predictors/ft_mv_kernelmethod.m,
	  statistics/ft_mv_performance.m: deleted multivariate doc

2010-12-07 10:31  marvger

	* [r2307] examples/ft_mv_test.m, predictors/ft_mv_glmnet.m: multivariate update

2010-12-06 09:44  marvger

	* [r2286] external/farquhar/tprod/tprod.mexa64: compiled tprod for 64 bit unix

2010-12-02 14:34  marvger

	* [r2265] doc/manual.tex, examples/69digits.mat, predictors/ft_mv_ensemble.m,
	  predictors/ft_mv_glmnet.m, predictors/ft_mv_one_against_one.m,
	  predictors/ft_mv_one_against_rest.m, predictors/ft_mv_rfda.m: recent update

2010-11-30 23:04  marvger

	* [r2237] external/farquhar/tprod/tprod.mexw32: tprod

2010-11-30 23:04  marvger

	* [r2236] doc/manual.aux, doc/manual.log, doc/manual.pdf, doc/manual.synctex.gz,
	  doc/manual.tex, examples/ft_mv_test.m, predictors/ft_mv_naive.m,
	  statistics/ft_mv_crossvalidator.m, statistics/ft_mv_performance.m: regular update

2010-11-27 18:45  marvger

	* [r2213] doc/manual.aux, doc/manual.log, doc/manual.pdf, doc/manual.synctex.gz,
	  doc/manual.tex, external/farquhar/whiten.m,
	  external/gerven/gmrflab/laplacedegenerate_ep.m, predictors/ft_mv_blogreg.m,
	  predictors/ft_mv_glmnet.m, predictors/ft_mv_gridsearch.m, predictors/ft_mv_klr.m,
	  predictors/ft_mv_rkls.m, predictors/ft_mv_svm.m, preprocessors/ft_mv_whitener.m,
	  statistics/ft_mv_crossvalidator.m: regular update

2010-11-27 11:55  roboos

	* [r2212] Contents.m, base/ft_mv_analysis.m, base/ft_mv_method.m, base/ft_mv_ndata.m,
	  base/ft_mv_noutput.m, examples/ft_mv_test.m, external/L1General/KPM/drawGraph.m,
	  external/L1General/KPM/setdiag.m, external/L1General/KPM/standardizeCols.m,
	  external/L1General/L1General/L1GeneralProjection.m,
	  external/L1General/L1General/sub/initialStepLength.m,
	  external/L1General/L1General/sub/noProgress.m,
	  external/L1General/L1General/sub/nonNegGrad.m,
	  external/L1General/L1General/sub/solveNewton.m,
	  external/L1General/L1General_applications.m, external/L1General/UGM/UGM_MRFLoss.m,
	  external/L1General/UGM/UGM_generate.m, external/L1General/UGM/UGM_initWeights.m,
	  external/L1General/UGM/UGM_makeCRFInfoStruct.m,
	  external/L1General/UGM/UGM_makeCRFNodePotentials.m,
	  external/L1General/UGM/UGM_makeCRFedgePotentials.m,
	  external/L1General/UGM/UGM_makeEdgeFeatures.m,
	  external/L1General/UGM/UGM_makeEdgeStruct.m, external/L1General/UGM/UGM_makeEdgeVE.m,
	  external/L1General/UGM/UGM_makeMRFInfoStruct.m,
	  external/L1General/UGM/UGM_makeMRFedgePotentials.m,
	  external/L1General/UGM/UGM_makeMRFnodePotentials.m,
	  external/L1General/UGM/UGM_splitWeights.m, external/L1General/UGM/fixed_Full.m,
	  external/L1General/UGM/infer/UGM_Infer_Exact.m,
	  external/L1General/UGM/sample/UGM_Sample_Exact.m,
	  external/L1General/crfChain/crfChain_infer.m,
	  external/L1General/crfChain/crfChain_initSentences.m,
	  external/L1General/crfChain/crfChain_initWeights.m,
	  external/L1General/crfChain/crfChain_loss.m,
	  external/L1General/crfChain/crfChain_makePotentials.m,
	  external/L1General/crfChain/crfChain_splitWeights.m,
	  external/L1General/lossFuncs/GaussianLoss.m, external/L1General/lossFuncs/LogisticLoss.m,
	  external/L1General/lossFuncs/MLPregressionLoss_efficient.m,
	  external/L1General/lossFuncs/MLPregressionPredict_efficient.m,
	  external/L1General/lossFuncs/ProbitLoss.m, external/L1General/lossFuncs/SSVMLoss.m,
	  external/L1General/lossFuncs/SoftmaxLoss2.m, external/L1General/lossFuncs/kernelRBF.m,
	  external/L1General/lossFuncs/penalizedL2.m,
	  external/L1General/lossFuncs/sparsePrecisionObj.m,
	  external/L1General/minFunc/ArmijoBacktrack.m,
	  external/L1General/minFunc/WolfeLineSearch.m, external/L1General/minFunc/isLegal.m,
	  external/L1General/minFunc/lbfgs.m, external/L1General/minFunc/lbfgsUpdate.m,
	  external/L1General/minFunc/mchol.m, external/L1General/minFunc/minFunc.m,
	  external/L1General/minFunc/minFunc_processInputOptions.m,
	  external/L1General/minFunc/polyinterp.m, external/L1General/misc/getColorsRGB.m,
	  external/L1General/misc/ispd.m, external/L1General/misc/makeData.m,
	  external/L1General/misc/myProcessOptions.m, external/L1General/misc/mylogsumexp.m,
	  external/L1General/misc/prettyPlot.m, external/bahramisharif/elasticlr.m,
	  external/farquhar/centKer.m, external/farquhar/compKernel.m, external/farquhar/dvComp.m,
	  external/farquhar/klr_cg.m, external/farquhar/l2svm_cg.m, external/farquhar/linKer.m,
	  external/farquhar/repop/repop.m, external/farquhar/repop/repop_testcases.m,
	  external/farquhar/repop/req.m, external/farquhar/repop/rge.m,
	  external/farquhar/repop/rgt.m, external/farquhar/repop/rldivide.m,
	  external/farquhar/repop/rle.m, external/farquhar/repop/rlt.m,
	  external/farquhar/repop/rminus.m, external/farquhar/repop/rne.m,
	  external/farquhar/repop/rplus.m, external/farquhar/repop/rpower.m,
	  external/farquhar/repop/rrdivide.m, external/farquhar/repop/rtimes.m,
	  external/farquhar/rkls.m, external/farquhar/tprod/etprod.m,
	  external/farquhar/tprod/orderTests.m, external/farquhar/tprod/tprod.m,
	  external/farquhar/tprod/tprod_testcases.m, external/gerven/gmrflab/GenDataLinear.m,
	  external/gerven/gmrflab/LinRegLaplaceEP.m, external/gerven/gmrflab/bayesianlinreg_ep.m,
	  external/gerven/gmrflab/construct_prior.m, external/gerven/gmrflab/fastinvc.m,
	  external/gerven/gmrflab/fastinvdiag.m, external/gerven/gmrflab/gausshermite.m,
	  external/gerven/gmrflab/gausslaguerre.m, external/gerven/gmrflab/laplacedegenerate_ep.m,
	  external/gerven/gmrflab/logist.m, external/gerven/gmrflab/plotCov.m,
	  external/gerven/gmrflab/sample_betas.m, external/gerven/gmrflab/sample_from_prior.m,
	  external/gerven/gmrflab/scale_prior.m, external/gerven/gmrflab/submodel.m,
	  external/gerven/pls/bls.m, external/gerven/pls/elastic.m,
	  external/gerven/pls/sparse_bls.m, external/glmnet/cvglmnet.m,
	  external/glmnet/cvglmnetPlot.m, external/glmnet/glmnet.m, external/glmnet/glmnetCoef.m,
	  external/glmnet/glmnetMex.m, external/glmnet/glmnetPlot.m,
	  external/glmnet/glmnetPredict.m, external/glmnet/glmnetPrint.m,
	  external/glmnet/glmnetSet.m, external/glmnet/nonzeroCoef.m,
	  external/herman/csp/csp-biosig/covm.m, external/herman/csp/csp-biosig/csp.m,
	  external/herman/csp/csp-biosig/decovm.m, external/herman/csp/csp-biosig/ecovm.m,
	  external/herman/csp/csp_decomp.m, external/herman/csp/csp_test.m,
	  external/herman/csp/csp_train.m, external/herman/csp/csp_wrapper.m,
	  external/herman/csp/eed_decomp.m, external/murphy/KPMstats/KLgauss.m,
	  external/murphy/KPMstats/beta_sample.m, external/murphy/KPMstats/chisquared_histo.m,
	  external/murphy/KPMstats/chisquared_prob.m, external/murphy/KPMstats/chisquared_table.m,
	  external/murphy/KPMstats/clg_Mstep.m, external/murphy/KPMstats/clg_Mstep_simple.m,
	  external/murphy/KPMstats/clg_prob.m, external/murphy/KPMstats/condGaussToJoint.m,
	  external/murphy/KPMstats/cond_indep_fisher_z.m,
	  external/murphy/KPMstats/condgaussTrainObserved.m,
	  external/murphy/KPMstats/condgauss_sample.m,
	  external/murphy/KPMstats/convertBinaryLabels.m, external/murphy/KPMstats/cwr_demo.m,
	  external/murphy/KPMstats/cwr_em.m, external/murphy/KPMstats/cwr_predict.m,
	  external/murphy/KPMstats/cwr_prob.m, external/murphy/KPMstats/cwr_test.m,
	  external/murphy/KPMstats/dirichlet_sample.m, external/murphy/KPMstats/distchck.m,
	  external/murphy/KPMstats/eigdec.m, external/murphy/KPMstats/est_transmat.m,
	  external/murphy/KPMstats/fit_paritioned_model_testfn.m,
	  external/murphy/KPMstats/fit_partitioned_model.m, external/murphy/KPMstats/gamma_sample.m,
	  external/murphy/KPMstats/gaussian_prob.m, external/murphy/KPMstats/gaussian_sample.m,
	  external/murphy/KPMstats/linear_regression.m, external/murphy/KPMstats/logist2.m,
	  external/murphy/KPMstats/logist2Apply.m,
	  external/murphy/KPMstats/logist2ApplyRegularized.m, external/murphy/KPMstats/logist2Fit.m,
	  external/murphy/KPMstats/logist2FitRegularized.m, external/murphy/KPMstats/logistK.m,
	  external/murphy/KPMstats/logistK_eval.m, external/murphy/KPMstats/marginalize_gaussian.m,
	  external/murphy/KPMstats/matrix_T_pdf.m, external/murphy/KPMstats/matrix_normal_pdf.m,
	  external/murphy/KPMstats/mc_stat_distrib.m, external/murphy/KPMstats/mixgauss_Mstep.m,
	  external/murphy/KPMstats/mixgauss_classifier_apply.m,
	  external/murphy/KPMstats/mixgauss_classifier_train.m,
	  external/murphy/KPMstats/mixgauss_em.m, external/murphy/KPMstats/mixgauss_init.m,
	  external/murphy/KPMstats/mixgauss_prob.m, external/murphy/KPMstats/mixgauss_prob_test.m,
	  external/murphy/KPMstats/mkPolyFvec.m, external/murphy/KPMstats/mk_unit_norm.m,
	  external/murphy/KPMstats/multinomial_prob.m,
	  external/murphy/KPMstats/multinomial_sample.m, external/murphy/KPMstats/normal_coef.m,
	  external/murphy/KPMstats/partial_corr_coef.m, external/murphy/KPMstats/parzen.m,
	  external/murphy/KPMstats/parzenC_test.m,
	  external/murphy/KPMstats/parzen_fit_select_unif.m, external/murphy/KPMstats/pca.m,
	  external/murphy/KPMstats/rndcheck.m, external/murphy/KPMstats/sample.m,
	  external/murphy/KPMstats/sample_discrete.m, external/murphy/KPMstats/sample_gaussian.m,
	  external/murphy/KPMstats/standardize.m, external/murphy/KPMstats/student_t_logprob.m,
	  external/murphy/KPMstats/student_t_prob.m,
	  external/murphy/KPMstats/unif_discrete_sample.m,
	  external/murphy/KPMstats/weightedRegression.m, external/murphy/KPMtools/approx_unique.m,
	  external/murphy/KPMtools/approxeq.m, external/murphy/KPMtools/argmax.m,
	  external/murphy/KPMtools/argmin.m, external/murphy/KPMtools/assign_cols.m,
	  external/murphy/KPMtools/axis_pct.m, external/murphy/KPMtools/block.m,
	  external/murphy/KPMtools/cell2num.m, external/murphy/KPMtools/choose.m,
	  external/murphy/KPMtools/collapse_mog.m, external/murphy/KPMtools/compute_counts.m,
	  external/murphy/KPMtools/conf2mahal.m, external/murphy/KPMtools/cross_entropy.m,
	  external/murphy/KPMtools/div.m, external/murphy/KPMtools/draw_circle.m,
	  external/murphy/KPMtools/draw_ellipse.m, external/murphy/KPMtools/draw_ellipse_axes.m,
	  external/murphy/KPMtools/em_converged.m, external/murphy/KPMtools/entropy.m,
	  external/murphy/KPMtools/exportfig.m, external/murphy/KPMtools/extend_domain_table.m,
	  external/murphy/KPMtools/factorial.m, external/murphy/KPMtools/find_equiv_posns.m,
	  external/murphy/KPMtools/hash_add.m, external/murphy/KPMtools/hash_del.m,
	  external/murphy/KPMtools/hash_lookup.m, external/murphy/KPMtools/image_rgb.m,
	  external/murphy/KPMtools/ind2subv.m, external/murphy/KPMtools/installC_KPMtools.m,
	  external/murphy/KPMtools/is_psd.m, external/murphy/KPMtools/is_stochastic.m,
	  external/murphy/KPMtools/isemptycell.m, external/murphy/KPMtools/isposdef.m,
	  external/murphy/KPMtools/loadcell.m, external/murphy/KPMtools/logb.m,
	  external/murphy/KPMtools/logdet.m, external/murphy/KPMtools/logsum.m,
	  external/murphy/KPMtools/logsum_simple.m, external/murphy/KPMtools/logsum_test.m,
	  external/murphy/KPMtools/logsumexp.m, external/murphy/KPMtools/logsumexpv.m,
	  external/murphy/KPMtools/marg_table.m, external/murphy/KPMtools/marginalize_table.m,
	  external/murphy/KPMtools/matprint.m, external/murphy/KPMtools/max_mult.m,
	  external/murphy/KPMtools/mk_multi_index.m, external/murphy/KPMtools/mk_stochastic.m,
	  external/murphy/KPMtools/mult_by_table.m, external/murphy/KPMtools/myintersect.m,
	  external/murphy/KPMtools/myismember.m, external/murphy/KPMtools/myones.m,
	  external/murphy/KPMtools/myrand.m, external/murphy/KPMtools/myrepmat.m,
	  external/murphy/KPMtools/myreshape.m, external/murphy/KPMtools/mysetdiff.m,
	  external/murphy/KPMtools/mysize.m, external/murphy/KPMtools/mysubset.m,
	  external/murphy/KPMtools/mysymsetdiff.m, external/murphy/KPMtools/myunion.m,
	  external/murphy/KPMtools/nchoose2.m, external/murphy/KPMtools/ncols.m,
	  external/murphy/KPMtools/nonmaxsup.m, external/murphy/KPMtools/normalise.m,
	  external/murphy/KPMtools/normalize.m, external/murphy/KPMtools/nrows.m,
	  external/murphy/KPMtools/num2strcell.m, external/murphy/KPMtools/partition_matrix_vec.m,
	  external/murphy/KPMtools/pca_kpm.m, external/murphy/KPMtools/pca_netlab.m,
	  external/murphy/KPMtools/plotColors.m, external/murphy/KPMtools/plotROC.m,
	  external/murphy/KPMtools/plot_axis_thru_origin.m, external/murphy/KPMtools/plot_ellipse.m,
	  external/murphy/KPMtools/plot_matrix.m, external/murphy/KPMtools/plot_polygon.m,
	  external/murphy/KPMtools/plotcov2.m, external/murphy/KPMtools/plotcov3.m,
	  external/murphy/KPMtools/plotgauss2d.m, external/murphy/KPMtools/polygon_area.m,
	  external/murphy/KPMtools/polygon_centroid.m, external/murphy/KPMtools/polygon_intersect.m,
	  external/murphy/KPMtools/previewfig.m, external/murphy/KPMtools/process_options.m,
	  external/murphy/KPMtools/rand_psd.m, external/murphy/KPMtools/read_dir.m,
	  external/murphy/KPMtools/rectintC.m, external/murphy/KPMtools/rectintSparse.m,
	  external/murphy/KPMtools/rectintSparseC.m, external/murphy/KPMtools/rnd_partition.m,
	  external/murphy/KPMtools/rotate_xlabel.m, external/murphy/KPMtools/safeStr.m,
	  external/murphy/KPMtools/sampleUniformInts.m, external/murphy/KPMtools/sample_discrete.m,
	  external/murphy/KPMtools/set_xtick_label.m,
	  external/murphy/KPMtools/set_xtick_label_demo.m, external/murphy/KPMtools/setdiag.m,
	  external/murphy/KPMtools/softeye.m, external/murphy/KPMtools/sort_evec.m,
	  external/murphy/KPMtools/splitLongSeqIntoManyShort.m,
	  external/murphy/KPMtools/sprintf_intvec.m, external/murphy/KPMtools/sqdist.m,
	  external/murphy/KPMtools/strmatch_multi.m, external/murphy/KPMtools/strmatch_substr.m,
	  external/murphy/KPMtools/subplot2.m, external/murphy/KPMtools/subsets.m,
	  external/murphy/KPMtools/subv2ind.m, external/murphy/KPMtools/sumv.m,
	  external/murphy/KPMtools/suptitle.m, external/murphy/KPMtools/unaryEncoding.m,
	  external/murphy/KPMtools/wrap.m, external/murphy/KPMtools/xticklabel_rotate90.m,
	  external/murphy/KPMtools/zipload.m, external/murphy/KPMtools/zipsave.m,
	  external/murphy/Kalman/AR_to_SS.m, external/murphy/Kalman/SS_to_AR.m,
	  external/murphy/Kalman/convert_to_lagged_form.m, external/murphy/Kalman/ensure_AR.m,
	  external/murphy/Kalman/eval_AR_perf.m, external/murphy/Kalman/kalman_filter.m,
	  external/murphy/Kalman/kalman_forward_backward.m,
	  external/murphy/Kalman/kalman_smoother.m, external/murphy/Kalman/kalman_update.m,
	  external/murphy/Kalman/learn_AR.m, external/murphy/Kalman/learn_AR_diagonal.m,
	  external/murphy/Kalman/learn_kalman.m, external/murphy/Kalman/learning_demo.m,
	  external/murphy/Kalman/sample_lds.m, external/murphy/Kalman/smooth_update.m,
	  external/murphy/Kalman/testKalman.m, external/murphy/Kalman/tracking_demo.m,
	  external/murphy/hmm/dhmm_em.m, external/murphy/hmm/dhmm_em_demo.m,
	  external/murphy/hmm/dhmm_em_online.m, external/murphy/hmm/dhmm_em_online_demo.m,
	  external/murphy/hmm/dhmm_logprob.m, external/murphy/hmm/dhmm_logprob_brute_force.m,
	  external/murphy/hmm/dhmm_logprob_path.m, external/murphy/hmm/dhmm_sample.m,
	  external/murphy/hmm/dhmm_sample_endstate.m, external/murphy/hmm/fixed_lag_smoother.m,
	  external/murphy/hmm/fixed_lag_smoother_demo.m, external/murphy/hmm/fwdback.m,
	  external/murphy/hmm/gausshmm_train_observed.m, external/murphy/hmm/mc_sample.m,
	  external/murphy/hmm/mc_sample_endstate.m, external/murphy/hmm/mdp_sample.m,
	  external/murphy/hmm/mhmmParzen_train_observed.m, external/murphy/hmm/mhmm_em.m,
	  external/murphy/hmm/mhmm_em_demo.m, external/murphy/hmm/mhmm_logprob.m,
	  external/murphy/hmm/mhmm_sample.m, external/murphy/hmm/mk_leftright_transmat.m,
	  external/murphy/hmm/mk_rightleft_transmat.m, external/murphy/hmm/pomdp_sample.m,
	  external/murphy/hmm/transmat_train_observed.m, external/murphy/hmm/viterbi_path.m,
	  external/pca/diffsnorm.m, external/pca/pca2.m, external/utilities/cartprod.m,
	  external/utilities/run_parallel.m, predictors/ft_mv_blogreg.m,
	  predictors/ft_mv_ensemble.m, predictors/ft_mv_glmnet.m, predictors/ft_mv_gridsearch.m,
	  predictors/ft_mv_kernelmethod.m, predictors/ft_mv_klr.m, predictors/ft_mv_linreg.m,
	  predictors/ft_mv_logreg.m, predictors/ft_mv_naive.m, predictors/ft_mv_predictor.m,
	  predictors/ft_mv_rfda.m, predictors/ft_mv_rkls.m, predictors/ft_mv_rls.m,
	  predictors/ft_mv_svm.m, preprocessors/ft_mv_csp.m, preprocessors/ft_mv_pca.m,
	  preprocessors/ft_mv_preprocessor.m, preprocessors/ft_mv_standardizer.m,
	  preprocessors/ft_mv_whitener.m, selectors/ft_mv_filterer.m, selectors/ft_mv_searchlight.m,
	  selectors/ft_mv_selector.m, statistics/ft_mv_crossvalidator.m, statistics/ft_mv_mcnemar.m,
	  statistics/ft_mv_performance.m, statistics/ft_mv_significance.m, timeseries/ft_mv_hmm.m,
	  timeseries/ft_mv_lds.m, timeseries/ft_mv_timeseries.m: fixed the svn properties
	  (eol-style, executable, keywords) on many *.m files

2010-11-26 21:52  marvger

	* [r2208] external/farquhar/repop, external/farquhar/repop/ddrepop.c,
	  external/farquhar/repop/dsrepop.c, external/farquhar/repop/makefile,
	  external/farquhar/repop/mxInfo.c, external/farquhar/repop/mxInfo.h,
	  external/farquhar/repop/mxInfo_mex.c, external/farquhar/repop/mxInfo_mex.h,
	  external/farquhar/repop/mxUtils.c, external/farquhar/repop/mxUtils.h,
	  external/farquhar/repop/readme, external/farquhar/repop/repop.c,
	  external/farquhar/repop/repop.def, external/farquhar/repop/repop.h,
	  external/farquhar/repop/repop.m, external/farquhar/repop/repop.mexmac,
	  external/farquhar/repop/repop.mexmaci, external/farquhar/repop/repop.mexmaci64,
	  external/farquhar/repop/repop_mex.c, external/farquhar/repop/repop_testcases.c,
	  external/farquhar/repop/repop_testcases.m, external/farquhar/repop/repop_util.c,
	  external/farquhar/repop/req.m, external/farquhar/repop/rge.m,
	  external/farquhar/repop/rgt.m, external/farquhar/repop/rldivide.m,
	  external/farquhar/repop/rle.m, external/farquhar/repop/rlt.m,
	  external/farquhar/repop/rminus.m, external/farquhar/repop/rne.m,
	  external/farquhar/repop/rplus.m, external/farquhar/repop/rpower.m,
	  external/farquhar/repop/rrdivide.m, external/farquhar/repop/rtimes.m,
	  external/farquhar/repop/sdrepop.c, external/farquhar/repop/ssrepop.c,
	  external/farquhar/repop/valgrind.sh, external/farquhar/tprod,
	  external/farquhar/tprod/ddtprod.c, external/farquhar/tprod/dstprod.c,
	  external/farquhar/tprod/etprod.m, external/farquhar/tprod/makefile,
	  external/farquhar/tprod/mxInfo.c, external/farquhar/tprod/mxInfo.h,
	  external/farquhar/tprod/mxInfo_mex.c, external/farquhar/tprod/mxInfo_mex.h,
	  external/farquhar/tprod/mxUtils.c, external/farquhar/tprod/mxUtils.h,
	  external/farquhar/tprod/orderTests.m, external/farquhar/tprod/readme,
	  external/farquhar/tprod/sdtprod.c, external/farquhar/tprod/sstprod.c,
	  external/farquhar/tprod/tprod.c, external/farquhar/tprod/tprod.def,
	  external/farquhar/tprod/tprod.h, external/farquhar/tprod/tprod.m,
	  external/farquhar/tprod/tprod.mexmac, external/farquhar/tprod/tprod.mexmaci,
	  external/farquhar/tprod/tprod_mex.c, external/farquhar/tprod/tprod_testcases.c,
	  external/farquhar/tprod/tprod_testcases.m, external/farquhar/tprod/tprod_util.c,
	  external/farquhar/tprod/valgrind.sh: new repop and tprod

2010-11-26 21:49  marvger

	* [r2207] base/ft_mv_noutput.m, doc/manual.aux, doc/manual.log, doc/manual.pdf,
	  doc/manual.synctex.gz, doc/manual.tex, examples/69digits.mat, examples/ft_mv_test.m,
	  external/farquhar/repop, external/farquhar/tprod, predictors/ft_mv_gridsearch.m,
	  preprocessors/ft_mv_pca.m, preprocessors/ft_mv_standardizer.m,
	  statistics/ft_mv_optimizer.m, statistics/ft_mv_performance.m,
	  statistics/ft_mv_significance.m: multivariate update

2010-11-26 11:50  marvger

	* [r2198] external/pca, external/pca/diffsnorm.m, external/pca/license.txt,
	  external/pca/pca2.m: added pca

2010-11-25 19:07  marvger

	* [r2193] predictors/ft_mv_glmnet.m, predictors/ft_mv_logreg.m: regular update
changelog/multivariate_changelog.txt · Last modified: 2012/05/22 20:37 (external edit)

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