2014-07-08 10:13  roboos

	* [r9707] private/cornerpoints.m: automatically synchronized identical files to revision
	  9706

2014-07-06 09:18  roboos

	* [r9702] ft_inside_vol.m: enhancement - added test script for FEM tutorial, implemented
	  first version of inside/outside detection for sourcemodel in combination with FEM
	  headmodel. See http://bugzilla.fcdonders.nl/show_bug.cgi?id=2632

2014-06-22 07:06  roboos

	* [r9664] private/find_mesh_edge.m, private/getsubfield.m, private/headsurface.m,
	  private/icosahedron.m, private/icosahedron2562.m, private/icosahedron42.m,
	  private/icosahedron642.m, private/ksphere.m, private/normals.m, private/rmsubfield.m,
	  private/setsubfield.m: automatically synchronized identical files to revision 9663

2014-06-17 12:16  roboos

	* [r9634] private/ft_headcoordinates.m: automatically synchronized identical files to
	  revision 9633

2014-06-16 10:55  vlalit

	* [r9630] private/scalingfactor.m: minor fix - make sure input cell arrays are columns

2014-05-15 09:59  vlalit

	* [r9538] ft_senslabel.m: automatically synchronized identical files to revision 9537

2014-05-14 15:46  roboos

	* [r9529] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  9528

2014-05-14 09:51  roboos

	* [r9523] private/ft_getopt.mexmaci64: automatically synchronized identical files to
	  revision 9522

2014-05-13 09:44  roboos

	* [r9513] ft_apply_montage.m: automatically synchronized identical files to revision 9512

2014-05-12 10:31  roboos

	* [r9500] ft_apply_montage.m: bugfix - swapped sel1 and sel2, see previous commit

2014-05-12 10:27  roboos

	* [r9498] ft_apply_montage.m: bugfix - copy the input chantype and chanunits over to the
	  montage. See http://bugzilla.fcdonders.nl/show_bug.cgi?id=2570, 2571 and 2572. This should
	  avoid erorrs due to converting something to unknown.

2014-05-12 09:51  jorhor

	* [r9496] private/scalingfactor.m: bugfix #2571 - eval statements unfixed, unknown
	  introduced

2014-05-12 09:29  jorhor

	* [r9494] private/scalingfactor.m: bugfix #2571 - eval statements fixed

2014-05-12 08:03  roboos

	* [r9491] private/ft_getopt.mexa64: automatically synchronized identical files to revision
	  9490

2014-05-11 11:16  roboos

	* [r9486] ft_apply_montage.m: enhancement - update the scaling of channel units if possible.
	  See http://bugzilla.fcdonders.nl/show_bug.cgi?id=2570

2014-05-11 09:15  roboos

	* [r9484] ft_apply_montage.m: bugfix - fix chanunit/chantype when input data is a montage

2014-05-11 08:46  roboos

	* [r9483] private/scalingfactor.m: automatically synchronized identical files to revision
	  9482

2014-05-11 08:23  roboos

	* [r9480] ft_apply_montage.m: enhancement - improved handling of chantype and chanunit in
	  the application of the montage. See http://bugzilla.fcdonders.nl/show_bug.cgi?id=2532

2014-05-01 16:00  roboos

	* [r9461] ft_senslabel.m, ft_senstype.m: bugfix - resolved an issue with the detection of
	  neuroscan data as ext1020 system. See http://bugzilla.fcdonders.nl/show_bug.cgi?id=2549

2014-04-02 07:30  roboos

	* [r9333] private/ft_getopt.mexa64, private/solid_angle.mexa64: automatically synchronized
	  identical files to revision 9332

2014-03-26 16:53  roboos

	* [r9323] ft_senstype.m: bugfix - improved automatic selection of EEG channels in the
	  eeg1010 case, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=2463

2014-03-26 15:40  dieloz

	* [r9316] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  9315

2014-03-11 14:14  roboos

	* [r9282] private/fixname.m: automatically synchronized identical files to revision 9281

2014-03-07 08:22  jansch

	* [r9255] ft_compute_leadfield.m: enhancement - added explicit backprojection option in the
	  context of rank reduction. default is yes, but can be overruled to return the orthogonal
	  basis vectors

2014-02-24 08:17  roboos

	* [r9230] compat: restructuring - removed the compat directory (and content) from the
	  preproc, fileio and forward subdirectories. The ft_ prefixing has been done long time ago
	  and bugzilla item 1114 is working without problems.

2014-02-24 07:40  roboos

	* [r9227] compat/apply_montage.m, compat/compute_leadfield.m, compat/convert_units.m,
	  compat/estimate_units.m, compat/inside_vol.m, compat/prepare_vol_sens.m,
	  compat/senslabel.m, compat/senstype.m, compat/sourcedepth.m, compat/transform_headshape.m,
	  compat/transform_sens.m, compat/transform_vol.m, compat/voltype.m: enhancement - removed
	  the "Subversion does not use Log" statement from many m-files, see
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2207

2014-02-21 13:04  dieloz

	* [r9216] private/ft_datatype_headmodel.m: bug 1666 - update backward compatibility to
	  consider the field change from c to cond

2014-02-18 08:57  roboos

	* [r9208] private/ft_datatype_headmodel.m, private/ft_datatype_sens.m: enhancement - force
	  conversion of sens and vol to double precision, added test script, removed warning_once
	  (very slow) in the conversion, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=2474

2014-02-17 12:30  roboos

	* [r9207] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  9206

2014-02-04 09:54  roboos

	* [r9183] ft_compute_leadfield.m: documentation - improved the documentation for constrained
	  dipole fitting, clear the variable "pos" at the moment it is not needed any more

2014-01-29 12:57  jorhor

	* [r9144] private/warning_once.m: automatically synchronized identical files to revision
	  9143

2014-01-29 12:52  jorhor

	* [r9141] private/warning_once.m: automatically synchronized identical files to revision
	  9140

2014-01-21 17:41  sardal

	* [r9119] ft_leadfield_openmeeg.m: from Dan Wong: fixes error when dealing with systems
	  where Matlab doesnt recognize the path variable even when OPENMEEG_PATH was set

2014-01-21 09:01  sardal

	* [r9118] ft_leadfield_openmeeg.m: ldLibraryPath0 set to persistent

2014-01-21 08:57  sardal

	* [r9117] ft_compute_leadfield.m: updated function call ft_om_compute_lead ->
	  ft_leadfield_openmeeg

2014-01-08 16:17  roboos

	* [r9083] ft_senslabel.m, ft_senstype.m: bugfix - further improvements to neuromag306alt and
	  neuromag122alt, it should now completely be gone. See
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2418

2014-01-08 10:25  roboos

	* [r9080] ft_senslabel.m, ft_senstype.m: bugfix - do not use neuromag306alt anywhere, only
	  use neuromag306 to indicate the acquisition system type (senstype). I implemented this by
	  concatenating the channel names with andd without space in a 2x306 long list.

2013-12-23 11:43  jansch

	* [r9059] private/ft_headcoordinates.m: automatically synchronized identical files to
	  revision 9058

2013-12-17 13:43  roboos

	* [r9041] ft_headmodel_interpolate.m: ienhancement - speed up the reshuffling of the
	  leadfield matrix by avoiding ind2sub

2013-12-17 12:34  roboos

	* [r9038] ft_headmodel_interpolate.m: enhancement - added support for method=besa, i.e.
	  leadfield interpolation based on BESA FEM forward solution. Moved test script to
	  fieldtrip/test. Do not return fiducials, only electrodes. See
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2336

2013-12-11 09:03  eelspa

	* [r9014] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  9013

2013-12-11 09:02  eelspa

	* [r9013] ft_apply_montage.m, ft_convert_units.m: enhancement(2332): sens structures can now
	  contain .chanposorg, .chanoriorg, and .labelorg fields, which are recognized by
	  ft_megplanar to enable planar gradient computation after e.g. ft_componentanalysis -->
	  ft_rejectcomponent. Note that .chanpos will still (correctly) reflect the ill-defined
	  positions by containing all NaNs.

2013-12-10 14:31  roboos

	* [r9009] ft_senslabel.m, ft_senstype.m: bugfix - resolved bug in senstype detection for
	  neuromag306alt, also fixed neuromag122alt and yokogawa9. Made test script that goes over
	  almost all options. See http://bugzilla.fcdonders.nl/show_bug.cgi?id=2418

2013-12-10 08:24  jansch

	* [r9001] private/ft_warp_apply.m: automatically synchronized identical files to revision
	  9000

2013-12-09 13:23  roboos

	* [r8997] ft_compute_leadfield.m, ft_headmodel_interpolate.m, ft_prepare_vol_sens.m,
	  private/leadfield_interpolate.m: enhancement and bugfix - updated the
	  leadfield_interpolate code and test script, see
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=1317

2013-12-09 10:19  eelspa

	* [r8989] ft_apply_montage.m: now properly restoring enhancement

2013-12-09 09:28  eelspa

	* [r8986] ft_apply_montage.m: restoring performance enhancement (see bug 1886)

2013-12-06 11:48  roboos

	* [r8983] private/ft_hastoolbox.m: automatically synchronized identical files to revision
	  8982

2013-12-05 10:51  roboos

	* [r8973] ft_import_surf.m: restructuring - all reading is now part of ft_read_headshape,
	  see http://bugzilla.fcdonders.nl/show_bug.cgi?id=2396

2013-12-05 10:48  roboos

	* [r8972] ft_iso2surf.m: restructuring - all functionality is now in ft_prepare_mesh, see
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2397

2013-12-05 08:41  roboos

	* [r8964] private/ft_datatype_headmodel.m: automatically synchronized identical files to
	  revision 8963

2013-12-05 08:41  roboos

	* [r8963] ft_compute_leadfield.m, ft_headmodel_concentricspheres.m,
	  ft_headmodel_singlesphere.m, private/eeg_leadfield1.m, private/eeg_leadfield4.m,
	  private/eeg_leadfield4_prepare.m: restructuring - use vol.cond instead of vol.c for teh
	  conductivity, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=1756#c21

2013-12-05 07:48  roboos

	* [r8962] private/ama2vol.m, private/loadama.m: restructuring - search-and-replaced dhk by
	  tri, this should make the code more internally consistent. See
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2292

2013-12-05 07:43  roboos

	* [r8961] private/find_mesh_edge.m, private/find_triangle_neighbours.m,
	  private/icosahedron.m, private/icosahedron162.m, private/icosahedron2562.m,
	  private/icosahedron42.m, private/icosahedron642.m, private/normals.m: automatically
	  synchronized identical files to revision 8960

2013-12-02 10:01  roboos

	* [r8933] ft_senstype.m: automatically synchronized identical files to revision 8932

2013-12-02 08:10  roboos

	* [r8928] ft_prepare_vol_sens.m: enhancement - reverted part of the change in commit 8922
	  and 8925. Rather than recomputing the channel positions for MEG, I keep the selected
	  channel positions. That is much cheaper and less error-prone than recomputing them. They
	  are still recomputed for EEG. See also http://bugzilla.fcdonders.nl/show_bug.cgi?id=2399

2013-11-29 20:14  roboos

	* [r8925] ft_apply_montage.m, ft_prepare_vol_sens.m: bugfix - the channel position was not
	  added correctly back to the sensor array, see
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2399

2013-11-29 14:53  jansch

	* [r8923] ft_apply_montage.m: bugfix - (2235) also keep the order of chanunit/chantype
	  consistent

2013-11-29 13:42  roboos

	* [r8922] ft_prepare_vol_sens.m: enhancement - only keep the fields in localspheres that are
	  really needed, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=2377#c32

2013-11-29 13:23  roboos

	* [r8921] ft_prepare_vol_sens.m: bugfix - do not use size(chanpos) to determine teh number
	  of channels, use length(label) instead

2013-11-29 13:20  roboos

	* [r8920] private/channelposition.m: automatically synchronized identical files to revision
	  8919

2013-11-29 13:20  roboos

	* [r8919] ft_prepare_vol_sens.m: enhancement - improved handling of EEG channel positions,
	  ensure that channel position and orientation cannot be messed up in ft_prepare_vol_sens

2013-11-29 12:46  roboos

	* [r8918] ft_headmodel_fns.m: bugfix - use the electorde positions, not the channel
	  positions

2013-11-29 11:50  roboos

	* [r8916] private/ft_hastoolbox.m: automatically synchronized identical files to revision
	  8915

2013-11-29 11:03  roboos

	* [r8913] private/ft_hastoolbox.m: automatically synchronized identical files to revision
	  8912

2013-11-28 23:46  vlalit

	* [r8908] ft_prepare_vol_sens.m: enhancement - related to
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2377

2013-11-26 21:59  roboos

	* [r8863] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  8862

2013-11-26 20:39  roboos

	* [r8861] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  8860

2013-11-25 15:40  eelspa

	* [r8845] private/match_str.m: automatically synchronized identical files to revision 8844

2013-11-22 12:33  roboos

	* [r8836] ft_convert_units.m: bugfix - resolved issue with inconsistent units for the
	  beamformer_extended tutorial, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=2387. I
	  also added two point-in-time copies of the relevant tutorials as test scripts for future
	  reference

2013-11-20 22:28  roboos

	* [r8826] ft_senslabel.m: bugfix and enhancement - improved the handling of all EEG channels
	  in the electrode definition in case the chantype is not yet specified. Updated the test
	  script with a case with unknown EEG channel labels. There was also an obscure error in
	  ft_senslabel that I fixed. See http://bugzilla.fcdonders.nl/show_bug.cgi?id=2377

2013-11-20 22:00  roboos

	* [r8825] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  8824

2013-11-20 22:00  roboos

	* [r8824] ft_apply_montage.m, ft_senstype.m: enhancement - improved support for handling of
	  electrode sensor definition for upcoming ft_datatype_sens, see also
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2377

2013-11-20 20:19  roboos

	* [r8823] ft_headmodel_infinite.m: bugfix - switch failed on empty input, detected by
	  regression of test_headmodel_infinite

2013-11-19 14:23  roboos

	* [r8817] ft_headmodel_concentricspheres.m, ft_headmodel_fns.m, ft_headmodel_infinite.m,
	  ft_headmodel_localspheres.m, ft_headmodel_singlesphere.m: enhancement - do not allow the
	  user to specify the units for the ft_headmodel_xxx functions, the geometry should be used
	  to determine the units consistently

2013-11-19 12:20  roboos

	* [r8814] private/current_dipole.m, private/magnetic_dipole.m: bugfix - fixed regression
	  error revealed by test_neuromag_units in magnetic_dipole due to a change in variable names
	  in http://code.google.com/p/fieldtrip/source/detail?r=8809

2013-11-19 12:13  roboos

	* [r8812] ft_senslabel.m: bugfix - resolved regression error in test_bug1871 due to changes
	  in ft_senslabel, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=1871#c9

2013-11-18 13:32  roboos

	* [r8811] ft_compute_leadfield.m, ft_prepare_vol_sens.m, private/current_dipole.m:
	  enhancement - added forward solution for MEG due to a current dipole in a homogenous
	  infinite medium

2013-11-18 13:30  roboos

	* [r8810] ft_headmodel_bemcp.m: enhancement - removed unused option from code

2013-11-18 13:30  roboos

	* [r8809] private/magnetic_dipole.m: bugfix - the value of mu0 was off by 4*pi

2013-11-18 13:28  roboos

	* [r8807] ft_convert_units.m: enhancement - better deal with volume conduction model with
	  multiple boundaries, remove unit from vol.bnd.unit and put it at the top level

2013-11-18 11:41  roboos

	* [r8803] ft_senslabel.m: bugfix - fixed regression error in test_bug1288 due to change in
	  planarchannelse/ft_senslabel

2013-11-18 09:40  roboos

	* [r8796] ft_senslabel.m: restructuring - removed the planarchannelset function, moved
	  functionality into ft_senslabel. See http://bugzilla.fcdonders.nl/show_bug.cgi?id=1919

2013-11-15 19:59  roboos

	* [r8793] private/channelposition.m: automatically synchronized identical files to revision
	  8792

2013-11-15 19:56  roboos

	* [r8791] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  8790

2013-11-15 19:56  roboos

	* [r8790] ft_prepare_vol_sens.m, private/channelposition.m: bugfix - resolved regression
	  error due to typo and due to confusion in meg+ref channels, now it always works for all
	  channels

2013-11-15 10:42  roboos

	* [r8786] private/channelposition.m: bugfix - fixed problem in channelposition for elec with
	  tra, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=2377

2013-11-15 10:28  roboos

	* [r8785] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  8784

2013-11-14 13:39  roboos

	* [r8780] ft_compute_leadfield.m: bugfix - divide with dipoleunit scaling rather than
	  multiply, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=2377

2013-11-14 10:34  roboos

	* [r8777] ft_prepare_vol_sens.m: enhancement - recompute channel positions after projecting
	  electrodes to the volume conductor surface, see
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2376

2013-11-14 09:04  roboos

	* [r8776] COPYING, README, ft_import_surf.m, ft_iso2surf.m, ft_leadfield_openmeeg.m,
	  private/eeg_infinite_monopole.m, private/ft_datatype_headmodel.m, private/lmoutrn.m,
	  private/mesh2edge.m, private/pinvNx2.m, private/plinprojn.m, private/ptriprojn.m,
	  private/rmsubfield.m, private/setsubfield.m, private/surface_nesting.m: enhancement -
	  cleaned up the svn properties according to
	  http://fieldtrip.fcdonders.nl/development/svn#keeping_the_svn_repository_tidy, see also
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2261#c7

2013-11-11 13:14  roboos

	* [r8757] ft_average_sens.m, private/ft_headcoordinates.m, private/headcoordinates.m:
	  restructuring - renamed headcoordinates into ft_headcoordinates, in the next commit I'll
	  also move it from private to utilities

2013-11-11 12:53  roboos

	* [r8755] private/ft_warp_apply.m: automatically synchronized identical files to revision
	  8754

2013-11-11 12:45  roboos

	* [r8753] ft_headmodel_fns.m, private/cornerpoints.m, private/ft_warp_apply.m,
	  private/leadfield_fns.m, private/leadfield_interpolate.m, private/warp_apply.m:
	  restructuring - renamed warp_apply into ft_warp_apply (idem for warp_optim and
	  warp_error), updated all calls to these functions, made compatibility wrappers in
	  utilities/compat. See http://bugzilla.fcdonders.nl/show_bug.cgi?id=316

2013-11-11 12:02  roboos

	* [r8752] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  8751

2013-11-08 20:16  roboos

	* [r8746] ft_inside_vol.m: bugfix - also detect openmeeg for inside detection using vol.bnd

2013-11-08 09:57  roboos

	* [r8743] private/find_mesh_edge.m, private/find_triangle_neighbours.m,
	  private/icosahedron.m, private/icosahedron162.m, private/icosahedron2562.m,
	  private/icosahedron42.m, private/icosahedron642.m, private/ksphere.m,
	  private/projecttri.m, private/retriangulate.m: bugfix - copied some files over from
	  private to forward/private, which was needed because ft_inside_vol now uses the headshape
	  function, and ft_inside_vol is being called from ft_prepare_sourcemodel. This change (and
	  hence this bug of missing dependencies) was introduced by me in revision 8739.

2013-11-08 08:17  roboos

	* [r8740] private/project_elec.m: automatically synchronized identical files to revision
	  8739

2013-11-08 08:17  roboos

	* [r8739] ft_inside_vol.m, ft_voltype.m, private/headsurface.m, private/lmoutrn.m,
	  private/pinvNx2.m, private/plinprojn.m, private/ptriprojn.m, private/surfaceorientation.m:
	  enhancement - implemented spherify and moveinward for ft_prepare_sourcemodel, moved all
	  inside detection from ft_prepare_sourcemodel to ft_inside_vol, copied the spherify code
	  from spm into private/mesh_spherify, various small changes to existing code, copied some
	  helper functions (with autosync) to fieldtrip/private, see
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2359

2013-11-07 11:14  roboos

	* [r8731] private/bounding_mesh.m: automatically synchronized identical files to revision
	  8730
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