2014-04-02 07:30  roboos

	* [r9333] private/ft_getopt.mexa64, private/solid_angle.mexa64: automatically synchronized
	  identical files to revision 9332

2014-03-26 16:53  roboos

	* [r9323] ft_senstype.m: bugfix - improved automatic selection of EEG channels in the
	  eeg1010 case, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=2463

2014-03-26 15:40  dieloz

	* [r9316] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  9315

2014-03-11 14:14  roboos

	* [r9282] private/fixname.m: automatically synchronized identical files to revision 9281

2014-03-07 08:22  jansch

	* [r9255] ft_compute_leadfield.m: enhancement - added explicit backprojection option in the
	  context of rank reduction. default is yes, but can be overruled to return the orthogonal
	  basis vectors

2014-02-24 08:17  roboos

	* [r9230] compat: restructuring - removed the compat directory (and content) from the
	  preproc, fileio and forward subdirectories. The ft_ prefixing has been done long time ago
	  and bugzilla item 1114 is working without problems.

2014-02-24 07:40  roboos

	* [r9227] compat/apply_montage.m, compat/compute_leadfield.m, compat/convert_units.m,
	  compat/estimate_units.m, compat/inside_vol.m, compat/prepare_vol_sens.m,
	  compat/senslabel.m, compat/senstype.m, compat/sourcedepth.m, compat/transform_headshape.m,
	  compat/transform_sens.m, compat/transform_vol.m, compat/voltype.m: enhancement - removed
	  the "Subversion does not use Log" statement from many m-files, see
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2207

2014-02-21 13:04  dieloz

	* [r9216] private/ft_datatype_headmodel.m: bug 1666 - update backward compatibility to
	  consider the field change from c to cond

2014-02-18 08:57  roboos

	* [r9208] private/ft_datatype_headmodel.m, private/ft_datatype_sens.m: enhancement - force
	  conversion of sens and vol to double precision, added test script, removed warning_once
	  (very slow) in the conversion, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=2474

2014-02-17 12:30  roboos

	* [r9207] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  9206

2014-02-04 09:54  roboos

	* [r9183] ft_compute_leadfield.m: documentation - improved the documentation for constrained
	  dipole fitting, clear the variable "pos" at the moment it is not needed any more

2014-01-29 12:57  jorhor

	* [r9144] private/warning_once.m: automatically synchronized identical files to revision
	  9143

2014-01-29 12:52  jorhor

	* [r9141] private/warning_once.m: automatically synchronized identical files to revision
	  9140

2014-01-21 17:41  sardal

	* [r9119] ft_leadfield_openmeeg.m: from Dan Wong: fixes error when dealing with systems
	  where Matlab doesnt recognize the path variable even when OPENMEEG_PATH was set

2014-01-21 09:01  sardal

	* [r9118] ft_leadfield_openmeeg.m: ldLibraryPath0 set to persistent

2014-01-21 08:57  sardal

	* [r9117] ft_compute_leadfield.m: updated function call ft_om_compute_lead ->
	  ft_leadfield_openmeeg

2014-01-08 16:17  roboos

	* [r9083] ft_senslabel.m, ft_senstype.m: bugfix - further improvements to neuromag306alt and
	  neuromag122alt, it should now completely be gone. See
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2418

2014-01-08 10:25  roboos

	* [r9080] ft_senslabel.m, ft_senstype.m: bugfix - do not use neuromag306alt anywhere, only
	  use neuromag306 to indicate the acquisition system type (senstype). I implemented this by
	  concatenating the channel names with andd without space in a 2x306 long list.

2013-12-23 11:43  jansch

	* [r9059] private/ft_headcoordinates.m: automatically synchronized identical files to
	  revision 9058

2013-12-17 13:43  roboos

	* [r9041] ft_headmodel_interpolate.m: ienhancement - speed up the reshuffling of the
	  leadfield matrix by avoiding ind2sub

2013-12-17 12:34  roboos

	* [r9038] ft_headmodel_interpolate.m: enhancement - added support for method=besa, i.e.
	  leadfield interpolation based on BESA FEM forward solution. Moved test script to
	  fieldtrip/test. Do not return fiducials, only electrodes. See
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2336

2013-12-11 09:03  eelspa

	* [r9014] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  9013

2013-12-11 09:02  eelspa

	* [r9013] ft_apply_montage.m, ft_convert_units.m: enhancement(2332): sens structures can now
	  contain .chanposorg, .chanoriorg, and .labelorg fields, which are recognized by
	  ft_megplanar to enable planar gradient computation after e.g. ft_componentanalysis -->
	  ft_rejectcomponent. Note that .chanpos will still (correctly) reflect the ill-defined
	  positions by containing all NaNs.

2013-12-10 14:31  roboos

	* [r9009] ft_senslabel.m, ft_senstype.m: bugfix - resolved bug in senstype detection for
	  neuromag306alt, also fixed neuromag122alt and yokogawa9. Made test script that goes over
	  almost all options. See http://bugzilla.fcdonders.nl/show_bug.cgi?id=2418

2013-12-10 08:24  jansch

	* [r9001] private/ft_warp_apply.m: automatically synchronized identical files to revision
	  9000

2013-12-09 13:23  roboos

	* [r8997] ft_compute_leadfield.m, ft_headmodel_interpolate.m, ft_prepare_vol_sens.m,
	  private/leadfield_interpolate.m: enhancement and bugfix - updated the
	  leadfield_interpolate code and test script, see
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=1317

2013-12-09 10:19  eelspa

	* [r8989] ft_apply_montage.m: now properly restoring enhancement

2013-12-09 09:28  eelspa

	* [r8986] ft_apply_montage.m: restoring performance enhancement (see bug 1886)

2013-12-06 11:48  roboos

	* [r8983] private/ft_hastoolbox.m: automatically synchronized identical files to revision
	  8982

2013-12-05 10:51  roboos

	* [r8973] ft_import_surf.m: restructuring - all reading is now part of ft_read_headshape,
	  see http://bugzilla.fcdonders.nl/show_bug.cgi?id=2396

2013-12-05 10:48  roboos

	* [r8972] ft_iso2surf.m: restructuring - all functionality is now in ft_prepare_mesh, see
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2397

2013-12-05 08:41  roboos

	* [r8964] private/ft_datatype_headmodel.m: automatically synchronized identical files to
	  revision 8963

2013-12-05 08:41  roboos

	* [r8963] ft_compute_leadfield.m, ft_headmodel_concentricspheres.m,
	  ft_headmodel_singlesphere.m, private/eeg_leadfield1.m, private/eeg_leadfield4.m,
	  private/eeg_leadfield4_prepare.m: restructuring - use vol.cond instead of vol.c for teh
	  conductivity, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=1756#c21

2013-12-05 07:48  roboos

	* [r8962] private/ama2vol.m, private/loadama.m: restructuring - search-and-replaced dhk by
	  tri, this should make the code more internally consistent. See
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2292

2013-12-05 07:43  roboos

	* [r8961] private/find_mesh_edge.m, private/find_triangle_neighbours.m,
	  private/icosahedron.m, private/icosahedron162.m, private/icosahedron2562.m,
	  private/icosahedron42.m, private/icosahedron642.m, private/normals.m: automatically
	  synchronized identical files to revision 8960

2013-12-02 10:01  roboos

	* [r8933] ft_senstype.m: automatically synchronized identical files to revision 8932

2013-12-02 08:10  roboos

	* [r8928] ft_prepare_vol_sens.m: enhancement - reverted part of the change in commit 8922
	  and 8925. Rather than recomputing the channel positions for MEG, I keep the selected
	  channel positions. That is much cheaper and less error-prone than recomputing them. They
	  are still recomputed for EEG. See also http://bugzilla.fcdonders.nl/show_bug.cgi?id=2399

2013-11-29 20:14  roboos

	* [r8925] ft_apply_montage.m, ft_prepare_vol_sens.m: bugfix - the channel position was not
	  added correctly back to the sensor array, see
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2399

2013-11-29 14:53  jansch

	* [r8923] ft_apply_montage.m: bugfix - (2235) also keep the order of chanunit/chantype
	  consistent

2013-11-29 13:42  roboos

	* [r8922] ft_prepare_vol_sens.m: enhancement - only keep the fields in localspheres that are
	  really needed, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=2377#c32

2013-11-29 13:23  roboos

	* [r8921] ft_prepare_vol_sens.m: bugfix - do not use size(chanpos) to determine teh number
	  of channels, use length(label) instead

2013-11-29 13:20  roboos

	* [r8920] private/channelposition.m: automatically synchronized identical files to revision
	  8919

2013-11-29 13:20  roboos

	* [r8919] ft_prepare_vol_sens.m: enhancement - improved handling of EEG channel positions,
	  ensure that channel position and orientation cannot be messed up in ft_prepare_vol_sens

2013-11-29 12:46  roboos

	* [r8918] ft_headmodel_fns.m: bugfix - use the electorde positions, not the channel
	  positions

2013-11-29 11:50  roboos

	* [r8916] private/ft_hastoolbox.m: automatically synchronized identical files to revision
	  8915

2013-11-29 11:03  roboos

	* [r8913] private/ft_hastoolbox.m: automatically synchronized identical files to revision
	  8912

2013-11-28 23:46  vlalit

	* [r8908] ft_prepare_vol_sens.m: enhancement - related to
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2377

2013-11-26 21:59  roboos

	* [r8863] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  8862

2013-11-26 20:39  roboos

	* [r8861] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  8860

2013-11-25 15:40  eelspa

	* [r8845] private/match_str.m: automatically synchronized identical files to revision 8844

2013-11-22 12:33  roboos

	* [r8836] ft_convert_units.m: bugfix - resolved issue with inconsistent units for the
	  beamformer_extended tutorial, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=2387. I
	  also added two point-in-time copies of the relevant tutorials as test scripts for future
	  reference

2013-11-20 22:28  roboos

	* [r8826] ft_senslabel.m: bugfix and enhancement - improved the handling of all EEG channels
	  in the electrode definition in case the chantype is not yet specified. Updated the test
	  script with a case with unknown EEG channel labels. There was also an obscure error in
	  ft_senslabel that I fixed. See http://bugzilla.fcdonders.nl/show_bug.cgi?id=2377

2013-11-20 22:00  roboos

	* [r8825] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  8824

2013-11-20 22:00  roboos

	* [r8824] ft_apply_montage.m, ft_senstype.m: enhancement - improved support for handling of
	  electrode sensor definition for upcoming ft_datatype_sens, see also
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2377

2013-11-20 20:19  roboos

	* [r8823] ft_headmodel_infinite.m: bugfix - switch failed on empty input, detected by
	  regression of test_headmodel_infinite

2013-11-19 14:23  roboos

	* [r8817] ft_headmodel_concentricspheres.m, ft_headmodel_fns.m, ft_headmodel_infinite.m,
	  ft_headmodel_localspheres.m, ft_headmodel_singlesphere.m: enhancement - do not allow the
	  user to specify the units for the ft_headmodel_xxx functions, the geometry should be used
	  to determine the units consistently

2013-11-19 12:20  roboos

	* [r8814] private/current_dipole.m, private/magnetic_dipole.m: bugfix - fixed regression
	  error revealed by test_neuromag_units in magnetic_dipole due to a change in variable names
	  in http://code.google.com/p/fieldtrip/source/detail?r=8809

2013-11-19 12:13  roboos

	* [r8812] ft_senslabel.m: bugfix - resolved regression error in test_bug1871 due to changes
	  in ft_senslabel, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=1871#c9

2013-11-18 13:32  roboos

	* [r8811] ft_compute_leadfield.m, ft_prepare_vol_sens.m, private/current_dipole.m:
	  enhancement - added forward solution for MEG due to a current dipole in a homogenous
	  infinite medium

2013-11-18 13:30  roboos

	* [r8810] ft_headmodel_bemcp.m: enhancement - removed unused option from code

2013-11-18 13:30  roboos

	* [r8809] private/magnetic_dipole.m: bugfix - the value of mu0 was off by 4*pi

2013-11-18 13:28  roboos

	* [r8807] ft_convert_units.m: enhancement - better deal with volume conduction model with
	  multiple boundaries, remove unit from vol.bnd.unit and put it at the top level

2013-11-18 11:41  roboos

	* [r8803] ft_senslabel.m: bugfix - fixed regression error in test_bug1288 due to change in
	  planarchannelse/ft_senslabel

2013-11-18 09:40  roboos

	* [r8796] ft_senslabel.m: restructuring - removed the planarchannelset function, moved
	  functionality into ft_senslabel. See http://bugzilla.fcdonders.nl/show_bug.cgi?id=1919

2013-11-15 19:59  roboos

	* [r8793] private/channelposition.m: automatically synchronized identical files to revision
	  8792

2013-11-15 19:56  roboos

	* [r8791] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  8790

2013-11-15 19:56  roboos

	* [r8790] ft_prepare_vol_sens.m, private/channelposition.m: bugfix - resolved regression
	  error due to typo and due to confusion in meg+ref channels, now it always works for all
	  channels

2013-11-15 10:42  roboos

	* [r8786] private/channelposition.m: bugfix - fixed problem in channelposition for elec with
	  tra, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=2377

2013-11-15 10:28  roboos

	* [r8785] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  8784

2013-11-14 13:39  roboos

	* [r8780] ft_compute_leadfield.m: bugfix - divide with dipoleunit scaling rather than
	  multiply, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=2377

2013-11-14 10:34  roboos

	* [r8777] ft_prepare_vol_sens.m: enhancement - recompute channel positions after projecting
	  electrodes to the volume conductor surface, see
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2376

2013-11-14 09:04  roboos

	* [r8776] COPYING, README, ft_import_surf.m, ft_iso2surf.m, ft_leadfield_openmeeg.m,
	  private/eeg_infinite_monopole.m, private/ft_datatype_headmodel.m, private/lmoutrn.m,
	  private/mesh2edge.m, private/pinvNx2.m, private/plinprojn.m, private/ptriprojn.m,
	  private/rmsubfield.m, private/setsubfield.m, private/surface_nesting.m: enhancement -
	  cleaned up the svn properties according to
	  http://fieldtrip.fcdonders.nl/development/svn#keeping_the_svn_repository_tidy, see also
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2261#c7

2013-11-11 13:14  roboos

	* [r8757] ft_average_sens.m, private/ft_headcoordinates.m, private/headcoordinates.m:
	  restructuring - renamed headcoordinates into ft_headcoordinates, in the next commit I'll
	  also move it from private to utilities

2013-11-11 12:53  roboos

	* [r8755] private/ft_warp_apply.m: automatically synchronized identical files to revision
	  8754

2013-11-11 12:45  roboos

	* [r8753] ft_headmodel_fns.m, private/cornerpoints.m, private/ft_warp_apply.m,
	  private/leadfield_fns.m, private/leadfield_interpolate.m, private/warp_apply.m:
	  restructuring - renamed warp_apply into ft_warp_apply (idem for warp_optim and
	  warp_error), updated all calls to these functions, made compatibility wrappers in
	  utilities/compat. See http://bugzilla.fcdonders.nl/show_bug.cgi?id=316

2013-11-11 12:02  roboos

	* [r8752] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  8751

2013-11-08 20:16  roboos

	* [r8746] ft_inside_vol.m: bugfix - also detect openmeeg for inside detection using vol.bnd

2013-11-08 09:57  roboos

	* [r8743] private/find_mesh_edge.m, private/find_triangle_neighbours.m,
	  private/icosahedron.m, private/icosahedron162.m, private/icosahedron2562.m,
	  private/icosahedron42.m, private/icosahedron642.m, private/ksphere.m,
	  private/projecttri.m, private/retriangulate.m: bugfix - copied some files over from
	  private to forward/private, which was needed because ft_inside_vol now uses the headshape
	  function, and ft_inside_vol is being called from ft_prepare_sourcemodel. This change (and
	  hence this bug of missing dependencies) was introduced by me in revision 8739.

2013-11-08 08:17  roboos

	* [r8740] private/project_elec.m: automatically synchronized identical files to revision
	  8739

2013-11-08 08:17  roboos

	* [r8739] ft_inside_vol.m, ft_voltype.m, private/headsurface.m, private/lmoutrn.m,
	  private/pinvNx2.m, private/plinprojn.m, private/ptriprojn.m, private/surfaceorientation.m:
	  enhancement - implemented spherify and moveinward for ft_prepare_sourcemodel, moved all
	  inside detection from ft_prepare_sourcemodel to ft_inside_vol, copied the spherify code
	  from spm into private/mesh_spherify, various small changes to existing code, copied some
	  helper functions (with autosync) to fieldtrip/private, see
	  http://bugzilla.fcdonders.nl/show_bug.cgi?id=2359

2013-11-07 11:14  roboos

	* [r8731] private/bounding_mesh.m: automatically synchronized identical files to revision
	  8730

2013-11-06 14:47  vlalit

	* [r8724] ft_headmodel_interpolate.m: enhancement - improvements to leadfield interpolation.
	  added extrapolation using smoothing.

2013-11-02 09:53  roboos

	* [r8698] ft_convert_units.m: bugfix - don't try to convert the channel units between
	  mm/cm/m if they are unknown

2013-11-01 13:29  roboos

	* [r8696] private/bounding_mesh.m, private/ft_datatype_sens.m: automatically synchronized
	  identical files to revision 8695

2013-11-01 13:29  roboos

	* [r8695] ft_compute_leadfield.m, ft_convert_units.m: enhancement - allow teh specification
	  of channel and dipole moment units in ft_compute_leadfield, allow SI units to be enforced
	  for the head model and subsequent forward modelling steps, general overhaul of unit
	  handling in the code (get rid of cfg.sourceunits and cfg.mriunits), be more consistent
	  with how units are being dealt with. This is a colelction of changes that relates to
	  SPM12, for which we are working towards explicit handling of physical units throughout the
	  analyses.

2013-11-01 13:24  roboos

	* [r8693] ft_estimate_units.m: enhancement - give warning if the estimate of the units is
	  ambiguous

2013-10-31 16:27  vlalit

	* [r8682] private/leadfield_interpolate.m: enhancement - changed to concatenated matrix for
	  the case of multiple points

2013-10-30 12:32  vlalit

	* [r8677] ft_headmodel_interpolate.m: bugfix - to force the use of SPM for lead field
	  interpolation

2013-10-30 09:35  roboos

	* [r8674] private/ft_datatype_sens.m: automatically synchronized identical files to revision
	  8673

2013-10-24 14:06  roboos

	* [r8637] private/ft_hastoolbox.m: automatically synchronized identical files to revision
	  8636

2013-10-21 13:00  sardal

	* [r8612] ft_compute_leadfield.m, ft_import_surf.m, ft_iso2surf.m, ft_leadfield_openmeeg.m,
	  ft_prepare_vol_sens.m: new OpenMEEG pipeline by Dan Wong & Sarang Dalal

2013-10-07 12:12  roboos

	* [r8584] private/ft_hastoolbox.m: automatically synchronized identical files to revision
	  8583

2013-10-01 13:47  jansch

	* [r8580] private/undobalancing.m: automatically synchronized identical files to revision
	  8579

2013-09-30 12:28  roboos

	* [r8571] private/channelposition.m: restructuring - only call undobalancing if current is
	  different from none

2013-09-30 11:37  roboos

	* [r8566] private/undobalancing.m: automatically synchronized identical files to revision
	  8565

2013-09-27 07:12  roboos

	* [r8562] ft_senstype.m: documentation - also mention 1020, 1010 and 1005

2013-09-27 07:04  roboos

	* [r8559] ft_senstype.m: automatically synchronized identical files to revision 8558

2013-09-27 06:56  roboos

	* [r8557] ft_senslabel.m: automatically synchronized identical files to revision 8556

2013-09-19 11:04  jansch

	* [r8472] ft_senstype.m: bugfix - reverted back to older version, because r8468 introduced a
	  critical bug in the correct detection of sensor types, due to an extra recursive call to
	  ft_senstype within ft_senstype

2013-09-18 16:03  sardal

	* [r8469] ft_senslabel.m, ft_senstype.m: automatically synchronized identical files to
	  revision 8468
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