2012-02-04 10:23 roboos
* [r5239] test/test_datasets.m: bugfix - ensure that the original dataset files can be
found, see http://bugzilla.fcdonders.nl/show_bug.cgi?id=1303
2012-02-04 09:40 roboos
* [r5238] ft_appenddata.m, ft_appendsource.m, ft_appendspike.m, ft_appendtimelock.m,
ft_denoise_pca.m, ft_interactiverealign.m, ft_volumesegment.m: enhancement - use
"ft_preamble help" to check the number of input arguments and to show the help and an
error if incorrect. See http://bugzilla.fcdonders.nl/show_bug.cgi?id=1033
2012-02-04 09:39 roboos
* [r5237] ft_conjunctionanalysis.m: enhancement - cleaned up the input and output handling,
use preambles, cleaned up the help. There should not be any functionality change in the
computations. See also bug 1033
2012-02-04 09:21 roboos
* [r5236] qsub/qsubcellfun.m, qsub/qsubcompile.m: enhancement - allow non-detected
dependencies to be specified in qsubcompile (for example trialfuns), see bug 1254
2012-02-04 09:08 roboos
* [r5235] fileio/private/ft_hastoolbox.m, forward/private/ft_hastoolbox.m,
inverse/private/ft_hastoolbox.m, peer/private/setcustompath.m: automatically synchronized
identical files to revision 5234
2012-02-04 09:08 roboos
* [r5234] ft_defaults.m, qsub/private/setcustompath.m, utilities/ft_hastoolbox.m:
enhancement - ensure that compiled/deployed applications do not try to change or extend
the MATLAB path, see also bug 1254
2012-02-03 09:50 borreu
* [r5233] realtime/buffer/src/dmarequest.c: bugfix - prevented some deadlocks in the
fieldtrip buffer do to locking order.
2012-02-03 09:02 jansch
* [r5232] fileio/private/headcoordinates.m, forward/private/headcoordinates.m,
utilities/private/headcoordinates.m: automatically synchronized identical files to
revision 5231
2012-02-03 09:02 jansch
* [r5231] ft_volumerealign.m, private/headcoordinates.m, test/test_bug1295.m: enhancement -
built-in check for left-handed input coordinate axes in ft_volumerealign, and flip the
anatomy to right-handed if this is the case. Updated headcoordinates to be able to use a
4th point (defined on the positive side of the XY-plane) for the fiducial-based
transformation matrices. Updated documentation
2012-02-03 08:49 jorhor
* [r5230] private/ft_fetch_sens.m: enhancement - prior to the error message when the
function fails, help will be printed (to help ppl defining sensors correctly)
2012-02-02 15:56 jorhor
* [r5229] ft_channelrepair.m: enhancement - preferring sensor definition from cfg over data,
according to versions before my commit yesterday
2012-02-02 13:45 jorhor
* [r5228] ft_channelrepair.m: bugfix - small bug fixed?
2012-02-02 08:55 lilmag
* [r5227] ft_sourceinterpolate.m: enhancement - changed order of conditional statements to
check for 2Dana
2012-02-02 08:23 jorhor
* [r5226] ft_channelrepair.m: bugfix - small bug fixed
2012-02-01 17:19 sashae
* [r5225] private/clusterstat.m, statistics_montecarlo.m: bugfix - see bug 783, in case of
random permutations, smallest possible p value should not be 0, but 1/N
2012-02-01 16:31 sashae
* [r5224] private/clusterstat.m: restructuring - changed spacing
2012-02-01 16:27 borreu
* [r5223] fileio/ft_read_event.m: bugfix - implemented fix suggested by Andrei in bug 1152.
2012-02-01 16:10 jorhor
* [r5222] test/test_ft_datatype_sens.m: enhancement - making testscript compatible with
windows
2012-02-01 16:00 arjsto
* [r5221] template/layout/CTF275.png: figure on which the layout in CTF275.mat is based
2012-02-01 15:52 roevdmei
* [r5220] utilities/private/data2raw.m: automatically synchronized identical files to
revision 5219
2012-02-01 15:52 roevdmei
* [r5219] compat/ft_databrowser_old.m, fileio/private/data2raw.m,
fileio/private/ft_datatype_raw.m, ft_freqsimulation.m, ft_scalpcurrentdensity.m,
ft_spike_triggeredspectrum.m, private/data2raw.m, private/rejectvisual_channel.m,
private/rejectvisual_summary.m, private/rejectvisual_trial.m, utilities/ft_datatype_raw.m:
changed fsample computation into 1/mean(diff(data.time{1}))
2012-02-01 15:45 borreu
* [r5218] ft_componentanalysis.m: enh - finalized CSP integration in ft_componentanalysis.
2012-02-01 15:39 roevdmei
* [r5217] ft_topoplotTFR.m: fixed a small typo in defaulting highlightfont
2012-02-01 15:30 jorhor
* [r5216] ft_channelrepair.m: bugfix-#644- channelrepair can repair missing channels now -
note however that this is not recommended (yet), see bug#634
2012-02-01 15:26 crimic
* [r5215] ft_volumelookup.m: bugfix - fixed bug 1088 (inconsistent field entries in input)
2012-02-01 15:10 jansch
* [r5214] fileio/private/ft_checkdata.m: automatically synchronized identical files to
revision 5213
2012-02-01 15:10 jansch
* [r5213] utilities/ft_checkdata.m: bugfix - reimplemented some code that got lost from
revision 4286 to 4287 when merging a branch back into the trunk
2012-02-01 14:47 arjsto
* [r5212] template/layout/easycapM1.png, template/layout/easycapM10.png,
template/layout/easycapM11.png, template/layout/easycapM14.png,
template/layout/easycapM15.png, template/layout/easycapM16.png,
template/layout/easycapM17.png, template/layout/easycapM19.png,
template/layout/easycapM20.png, template/layout/easycapM22.png,
template/layout/easycapM23.png, template/layout/easycapM24.png,
template/layout/easycapM25.png, template/layout/easycapM3.png,
template/layout/easycapM7.png: added figures (png) on which the corresponding layout
matfiles are based
2012-02-01 14:23 jansch
* [r5211] ft_prepare_layout.m: enhancement - automatic scaling of height and width based on
minimal sensor distance should only contain sensor pairs with a distance > 0
2012-02-01 13:47 roevdmei
* [r5210] ft_artifact_clip.m: now uses data.sampleinfo, but still has the old structure
2012-02-01 13:45 crimic
* [r5209] plotting/ft_plot_topo3d.m: bugfix - improved help
2012-02-01 13:44 crimic
* [r5208] plotting/ft_plot_topo3d.m: bugfix - added short documentation of the optional
arguments
2012-02-01 13:40 sashae
* [r5207] ft_freqanalysis.m, ft_preprocessing.m, ft_timelockanalysis.m: documentation -
added guidelines to the help
2012-02-01 13:34 crimic
* [r5206] test/test_bug70.m: bugfix - added test function for bug 70
2012-02-01 13:31 jansch
* [r5205] private/rejectvisual_summary.m, test/test_bug1230.m: enhancement - made
ft_multiplotER interactive when plotting single trials in ft_rejectvisual. This addresses
bug 1230
2012-02-01 13:20 jansch
* [r5204] ft_topoplotIC.m: enhancement - only switch on splitting into subplots if more than
one component is requested. This addresses bug 1243
2012-02-01 13:20 eelspa
* [r5203] utilities/ft_checkconfig.m: added allowedval option to ft_checkconfig (bug 1045)
2012-02-01 13:19 jansch
* [r5202] test/test_bug1243.m, test/test_bug1243.mat: enhancement - check-in test files for
bug 1243
2012-02-01 13:09 arjsto
* [r5201] template/layout/easycapM1.mat, template/layout/easycapM10.mat,
template/layout/easycapM11.mat, template/layout/easycapM14.mat,
template/layout/easycapM15.mat, template/layout/easycapM16.mat,
template/layout/easycapM17.mat, template/layout/easycapM20.mat,
template/layout/easycapM22.mat, template/layout/easycapM23.mat,
template/layout/easycapM24.mat, template/layout/easycapM25.mat,
template/layout/easycapM3.mat, template/layout/easycapM7.mat: easycap layouts based on the
official figures
2012-02-01 13:08 jorhor
* [r5200] template/neighbours/mpi_59_channels.mat,
template/neighbours/mpi_59_channels_neighb.mat: changed name of neighbour template to make
it consistent
2012-02-01 13:06 jorhor
* [r5199] ft_appenddata.m: enhancement-#1167- added cross-reference from ft_appenddata to
ft_appendfreq
2012-02-01 13:06 arjsto
* [r5198] template/layout/CTF275.mat: simple CTF 275 layout matfile
2012-02-01 13:01 jorhor
* [r5197] ft_prepare_neighbours.m, template/neighbours/mpi_59_channels.mat,
test/test_datasets.m, test/test_ft_megplanar.m: bugfix-#866- addded neighbour template for
EEG cap at the MPI and made prepare_neighbours to select only those channels that are
present in the data
2012-02-01 12:57 crimic
* [r5196] forward/ft_compute_leadfield.m: bugfix - rank reduction applied to openmeeg lf too
2012-02-01 12:42 johzum
* [r5195] test/test_datasets.m: bugfix 1303: path change to 'latest'
2012-02-01 12:36 johzum
* [r5194] test/test_ft_timelockanalysis.m: bugfix: 1300. use isequalwithequalnans rather
than isequal
2012-02-01 12:29 giopia
* [r5193] fileio/private/read_micromed_event.m: prevent function from crashing if there are
no triggers
2012-02-01 08:30 jansch
* [r5192] ft_sourceanalysis.m: bugfix - fixed typo in line 285
2012-02-01 08:06 jansch
* [r5191] fileio/ft_read_header.m: bugfix - fixed typo in line 124
2012-02-01 07:54 jansch
* [r5190] ft_sourceanalysis.m: clean up - removed undocumented and experimental code related
to prewhitening
2012-01-31 21:09 roboos
* [r5189] fileio/ft_read_header.m: bugfix - reinserted the support for gtec_mat that droped
out of the code due to a faulty svn merge, see
http://bugzilla.fcdonders.nl/show_bug.cgi?id=1299
2012-01-31 10:50 jansch
* [r5188] template/headmodel/standard_singleshell.mat, template/sourcemodel,
template/sourcemodel/standard_grid3d10mm.mat, template/sourcemodel/standard_grid3d5mm.mat,
template/sourcemodel/standard_grid3d6mm.mat, template/sourcemodel/standard_grid3d8mm.mat:
enhancement - added template singleshell volume conductor model (based on
fieldtrip/template/standard_mri) and a set of 3D regular grids at different resolutions
(specified in MNI space), to be used for inverse warping
2012-01-31 08:42 jansch
* [r5187] fileio/ft_filetype.m, fileio/ft_read_mri.m, fileio/ft_write_mri.m,
ft_volumewrite.m: enhancement - built in checks and errors when people want to read in
.mgz files on a PC, which is not possible
2012-01-30 16:37 roboos
* [r5186] test/test_bug1297.m: enhancement - created test script for bug 1297 (Lilla
reported a problem with ft_volumesegment)
2012-01-30 15:13 jansch
* [r5185] ft_networkanalysis.m: bugfix - fixed typo in headerline, introduced by faulty
copy-and-paste action
2012-01-30 11:41 jansch
* [r5184] external/freesurfer/README, external/freesurfer/isdicomfile.m,
external/freesurfer/load_dicom_fl.m, external/freesurfer/load_dicom_series.m,
fileio/ft_read_mri.m: enhancement - use freesurfer to read in dicom-files. This deals with
an issue related to the handedness of the volumes.
2012-01-26 22:31 roboos
* [r5183] test/test_bug1254.m: enhancement - added test script for bug 1254 (compiled
qsubcellfun)
2012-01-26 21:34 roboos
* [r5182] qsub/qsubcellfun.m, qsub/qsubfeval.m: bugfix - solved a problem with stacking,
which caused the example mentioned in the help not to work any more. Furthermore some
small changes to the way that the command line is being built up.
2012-01-26 08:47 jorhor
* [r5181] test/test_ft_megplanar.m, test/test_ft_megrealign.m: making (two) testscripts
compatible with new test data folder structure
2012-01-26 08:44 jorhor
* [r5180] private/ft_fetch_sens.m, private/ft_fetch_vol.m, utilities/ft_fetch_sens.m,
utilities/ft_fetch_vol.m: moving fetch_vol and fetch_sens to private folder
2012-01-25 15:19 eelspa
* [r5179] private/join_str.m: added join_str private function to replace various
subfunctions doing the same thing
2012-01-25 15:19 eelspa
* [r5178] ft_multiplotER.m, ft_multiplotTFR.m, ft_singleplotER.m, ft_singleplotTFR.m,
ft_topoplotER.m, ft_topoplotTFR.m: added custom figure window titles to the major plotting
functions, more to follow (see bug 1289)
2012-01-25 15:04 roboos
* [r5177] utilities/printstruct.m: enhancement - allow printing structure arrays (along one
dimension only)
2012-01-25 14:48 roboos
* [r5176] ft_channelrepair.m, ft_freqstatistics.m, ft_megplanar.m, ft_neighbourplot.m,
ft_prepare_headmodel.m, ft_scalpcurrentdensity.m, statistics_montecarlo.m: documentation -
made the documentation more consistent with respect to the specification of neighbours
2012-01-25 11:43 jorhor
* [r5175] utilities/ft_fetch_vol.m: bugfix -#1285- made a consistent way to retrive volume
definitions -see ft_fetch_vol
2012-01-25 11:42 jorhor
* [r5174] compat/ft_headmodelplot.m, compat/ft_prepare_bemmodel.m, ft_dipolefitting.m,
ft_dipolesimulation.m, ft_electroderealign.m, ft_headmodelplot.m, ft_megplanar.m,
ft_megrealign.m, ft_neighbourplot.m, ft_prepare_bemmodel.m, ft_prepare_headmodel.m,
ft_prepare_leadfield.m, ft_prepare_neighbours.m, ft_scalpcurrentdensity.m,
ft_sensorrealign.m, ft_sourceanalysis.m, private/prepare_headmodel.m,
test/test_ft_megplanar.m, utilities/ft_fetch_sens.m: bugfix-#1078 #1090- implemented
consistent ways to retrieve sens definitions, see ft_fetch_sens
2012-01-25 09:15 jansch
* [r5173] ft_networkanalysis.m: documentation change - improved documentation
2012-01-25 09:13 jorhor
* [r5172] template/layout/yokogawa440ag.lay, template/layout/yokogawa440all.lay,
template/layout/yokogawa440pg.lay: enhancement-#805- separate layouts for yokogawa planar
and axial gradiometers-thx to kaoru amano
2012-01-24 14:27 borreu
* [r5171] test/test_csp.m: bugfix - Converted CSP test script to function (needed for
xUnit).
2012-01-24 14:21 borreu
* [r5170] ft_componentanalysis.m: enhancement - finished integration of CSP in
ft_componentanalysis.
Doc still needs to be updated.
2012-01-24 14:11 jansch
* [r5169] ft_movieplotTFR.m: enhancement - some improvements with respect to rendering,
changed cubic interpolation to slower (but nicer) v4 interpolation
2012-01-24 12:06 crimic
* [r5168] forward/private/eeg_slab_monopole.m: bugfix - changed a parameter in the mirror
charges
2012-01-24 10:47 jansch
* [r5167] fileio/ft_read_headshape.m: enhancement - also read the functional data from a
gifti if present
2012-01-24 10:26 jansch
* [r5166] ft_rejectcomponent.m: enhancement - fixed issue with the application of the
correct balancing to the gradiometer array when doing sequential component rejections
2012-01-23 16:31 jorhor
* [r5165] ft_artifact_zvalue.m: bugfix-#1279- ft_artifact_zvalue works in interactive mode
again
2012-01-23 16:11 borreu
* [r5164] test/private/csp.m: automatically synchronized identical files to revision 5163
2012-01-23 16:10 borreu
* [r5163] private/csp.m: bugfix - Fixed call-signature in csp.
2012-01-23 15:56 borreu
* [r5162] test/private/csp.m: enhancement - Updated CSP documentation.
2012-01-23 15:53 borreu
* [r5161] test/private/csp.m: enhancement - Added autosync for CSP test.
2012-01-23 15:50 borreu
* [r5160] private/csp.m, test/test_csp.m: enhancement - Added tests for CSP and fixed
implementation.
Note that the test script cannot yet find the CSP function, since it is defined
in a private directory. An autosync between the corresponding private dirs
still needs to be made.
Please note that CSP is one convoluted mess. The original papers (Koles and
Ramoser) contain lots of notational mistakes, and tweaks that are irrelevant to
the optimization problem (ad hoc rescaling the covariance etc.). As such, I
have focused on a correct implementation of the core functionality. The ad-hoc
tweaks can in those papers can still be applied before the covariance matrices
are passed to the CSP function.
2012-01-23 15:50 eelspa
* [r5159] ft_multiplotTFR.m: after selecting channels in a multiplot in interactive mode,
cfg.baseline is now set to 'no', to prevent ft_singleplotTFR from applying a baseline
correction on already-corrected data (bug 1278)
2012-01-23 08:10 jansch
* [r5158] ft_multiplotER.m: enhancement - physically subselect only channels that are
required by cfg.channel, to avoid including them in subsequent interactive calls.
(bug1245)
2012-01-22 14:49 roboos
* [r5157] @config/config.m, ft_channelselection.m, ft_componentanalysis.m,
ft_connectivityanalysis.m, ft_connectivityplot.m, ft_connectivitysimulation.m,
ft_defaults.m, ft_denoise_pca.m, ft_denoise_synthetic.m, ft_documentationindex.m,
ft_documentationreference.m, ft_networkanalysis.m, ft_prepare_sourcemodel.m,
ft_spike_isihist.m, ft_spike_plot_raster.m, ft_spikedensity.m, ft_spikesimulation.m,
ft_topoplotIC.m, ft_wizard.m, statistics_montecarlo.m, statistics_stats.m: documentation -
some cleanups to make it more consistent
2012-01-20 10:46 roboos
* [r5156] qsub/qsubcellfun.m: bugfix - (actually a work around), set stack to 1 in case of
compilation, see bug 1254 and 1255
2012-01-20 10:18 roboos
* [r5155] fileio/private/db_close.m, fileio/private/db_insert.m,
fileio/private/db_insert_blob.m, fileio/private/db_open.m, fileio/private/db_select.m,
fileio/private/db_select_blob.m: bugfix - moved the missing db_xxx functions for
fcdc_mysql from the old CVS to the present SVN repository. This does not yet fully resolve
the bug, because there are also some corresponding mex files that I still have to look
into.
2012-01-20 09:33 roevdmei
* [r5154] fileio/ft_filetype.m: filetype now saves the 'unknown' as type if the file/dir
already exist
2012-01-20 09:07 roboos
* [r5153] test/test_bug798.m, test/test_bug921.m: enhancement - added a test script for bug
921, updated the test script for bug 798 by removing the comments that pertained to 921.
2012-01-20 08:09 jansch
* [r5152] ft_singleplotER.m, plotting/ft_plot_vector.m, test/test_bug1270.m: bugfix -
addressed issue with masking (bug1270)
2012-01-19 13:23 roboos
* [r5151] private/neuralynx_crc.m: bugfix - idem 5150
2012-01-19 13:22 roboos
* [r5150] private/neuralynx_getheader.m: bugfix - added missing function
fieldtrip/private/neuralynx_getheader from fileio, it was missing but is required for
spike splitting
2012-01-19 08:44 jansch
* [r5149] ft_freqstatistics.m, statfun/statfun_indepsamplesZcoh.m: enhancement - output the
correct labelcmb-array when using statfun_indepsamplesZcoh. This (and the previous commit)
addresses bug895
2012-01-19 08:34 jansch
* [r5148] statfun/statfun_indepsamplesZcoh.m, test/test_bug895.m: enhancement - change the
dimord in the output to 'chancmb_XXX' when using statfun_indepsamplesZcoh
2012-01-18 09:23 johzum
* [r5147] preproc/ft_preproc_bandstopfilter.m, preproc/ft_preproc_highpassfilter.m,
test/test_bug1248.m: bug1248: avoid warning with odd filter order when filter order is set
by default, not by user.
2012-01-17 12:59 borreu
* [r5146] ft_scalpcurrentdensity.m: enhancement - typo in comment in
ft_scalpcurrentdensity.m.
2012-01-17 12:37 borreu
* [r5145] fileio/private/ft_convert_units.m: automatically synchronized identical files to
revision 5144
2012-01-17 12:37 borreu
* [r5144] forward/ft_convert_units.m: bugfix - fixed bug1112 (problem in estimation of head
size in ft_convert_sens).
2012-01-17 10:56 eelspa
* [r5143] statistics_montecarlo.m: fixed typo in previously commited documentation for
cfg.clusterstatistic='wcm'
2012-01-17 10:45 eelspa
* [r5142] statistics_montecarlo.m: added documentation for cfg.clusterstatistic='wcm' to
statistics_montecarlo (bug 1259)
2012-01-16 14:10 eelspa
* [r5141] ft_analysisprotocol.m: ft_analysisprotocol now properly displays cfg scripts when
a box is clicked (bug 1244)
2012-01-13 11:19 eelspa
* [r5140] ft_analysisprotocol.m: ft_analysisprotocol now support branching of all types (bug
1257)
Share this page: