2010-07-29 15:29 roevdmei
* ft_singleplotER.m: added option for specifying cfg.linestyle as a cell-array
2010-07-29 13:50 roevdmei
* ft_freqanalysis.m: fixed major bug with variable time-windows
2010-07-29 13:23 roevdmei
* ft_freqanalysis.m: fixed bug with dof calculation mtmconvol
2010-07-29 12:48 crimic
* ft_databrowser.m: modified to fit with new data.sampleinfo field, For datasets without
such a field it defines one on the fly recovering information from other data fields
2010-07-29 11:42 roevdmei
* private/specest_mtmconvol.m: cleaned up, some redundant code
2010-07-29 11:41 roevdmei
* private/specest_mtmconvol.m: added comments related to speedups
2010-07-29 11:41 roevdmei
* private/specest_mtmfft.m: added comments related to speedups
2010-07-29 09:39 roevdmei
* private/specest_mtmfft.m: fixed bug with padding, increased speeds, now 2-3 fold faster
than old implementation
2010-07-29 09:38 roevdmei
* ft_freqanalysis.m: reimplemented variable taper numbers for mtmconvol, fixed bug with
dimord when method is mtmfft
2010-07-29 09:20 roevdmei
* private/specest_mtmconvol.m: implemented variable taper numbers again by nanning no
present tapers, major speed increases (2-3 fold) compared to old implementation
2010-07-28 16:52 crimic
* ft_redefinetrial.m: added a if-check to look if trl = findcfg gives an empty matrix
2010-07-28 08:05 roevdmei
* private/specest_mtmconvol.m: removed tapsmofrq error, it's in the wrapper now
2010-07-27 14:24 roevdmei
* ft_freqanalysis.m: added sine taper comment
2010-07-27 10:12 roevdmei
* ft_freqanalysis.m: fixed sine tapers for mtmfft, added cumsumcnt for mtmfft, mtmfft should
be fully working now
2010-07-27 10:08 roevdmei
* private/specest_mtmfft.m: added removal of last sine taper
2010-07-27 09:54 roevdmei
* ft_freqanalysis.m: sine tapers should be properly implemented now for mtmconvol
2010-07-27 09:42 roevdmei
* private/specest_mtmconvol.m: tapsmofrq error now also occurs when taper = sine
2010-07-27 09:32 roevdmei
* private/specest_mtmconvol.m: removed last taper from sine tapers, was implicitly done in
old implementation
2010-07-27 08:04 roevdmei
* ft_freqanalysis.m: added calcdof and cumtapcnt for mtmconvol
2010-07-27 07:34 roevdmei
* private/specest_mtmconvol.m: readded ntapers as output
2010-07-26 14:46 roevdmei
* ft_freqanalysis.m: continued implementing specest, mtmconvol should be fully ready to be
testen
2010-07-26 14:38 tilsan
* ft_componentanalysis.m: added support for calling sobi.m from eeglab
2010-07-26 14:23 roevdmei
* private/specest_mtmconvol.m: removed support for different number of tapers per frequency
2010-07-26 13:10 roevdmei
* private/specest_mtmconvol.m: changed end routine for major speeds-ups, fourier output is
now gathered in a cell-array, and then reshaped into an n-way at the end (would be handy
if this was not required)
2010-07-26 12:49 roevdmei
* private/specest_mtmconvol.m: changed output (spectrum) to be tap*freq-chan-time, and
changed output of ntaper to tapfreq, a sort of index vector for the first dim of spectrum
2010-07-26 11:28 jansch
* connectivity/ft_connectivity_corr.m: fixed some typos with respect to handling of hasjack
keyval-pair (reported by Nic)
2010-07-26 09:32 roevdmei
* private/specest_mtmconvol.m: added comment
2010-07-26 08:53 roevdmei
* ft_freqanalysis.m: half-way through implementing conversion to specest, commiting for
safety purposes
2010-07-26 07:43 jansch
* ft_rejectartifact.m: allow for call to artifact_XXX with data as second input
2010-07-24 12:58 jansch
* public/selectdata.m: swapped the order of the input into strmatch ll.86-92, which was
incorrect and caused strange behavior.
2010-07-22 15:14 jansch
* public/private/selfromraw.m: commented out old-style keeping track of trl in nested cfg
structure
2010-07-22 15:13 jansch
* ft_redefinetrial.m: removed allocation of trl and trlold in nested cfg (is deprecated)
2010-07-22 15:13 jansch
* ft_preprocessing.m: removed call to findcfg if hasdata (is now deprecated).
2010-07-22 11:52 stekla
* realtime/rda2ft/rda2ft.c, realtime/rda2ft/rda2ft.exe: Fixed sample index in
marker-to-event translation (relative to block in RDA, absolute index in FT).
2010-07-22 09:41 stekla
* realtime/buffer/python/FieldTrip.py: Added putHeader, poll/wait requests, and handling of
chunks (channel names) to Python client.
2010-07-22 07:03 jansch
* fileio/private/read_ctf_mri.m, fileio/private/read_ctf_mri4.m: Disabled left-right flip by
replacing if true by if false. prior to this change, the volumes returned were left-right
flipped, leading to a left-handed coordinate system. As such this was incorrect
2010-07-21 13:35 jansch
* public/private/seloverdim.m: removed handling of trl-matrix.
2010-07-21 12:52 jansch
* public/private/fixtrialdef.m, public/private/selfromraw.m: changed fieldname trialdef into
sampleinfo
2010-07-21 12:52 jansch
* public/checkdata.m, public/fetch_data.m, public/fetch_header.m: changed fieldname trialdef
into sampleinfo
2010-07-21 12:51 jansch
* ft_appenddata.m, ft_channelnormalise.m, ft_channelrepair.m, ft_databrowser.m,
ft_megplanar.m, ft_megrealign.m, ft_preprocessing.m, ft_redefinetrial.m,
ft_rejectartifact.m, ft_rejectvisual.m, ft_resampledata.m, ft_scalpcurrentdensity.m:
changed fieldname trialdef into sampleinfo
2010-07-21 11:53 jansch
* ft_channelrepair.m, ft_scalpcurrentdensity.m: added support for trialinfo and trialdef
2010-07-21 11:46 jansch
* ft_rejectartifact.m: built in support for trialdef and trialinfo
2010-07-21 11:45 jansch
* ft_redefinetrial.m: allowed for correct handling of trialinfo when redefining based on
cfg.trl
2010-07-21 11:44 jansch
* private/artifact_viewer.m: changed call to read_fcdc_header into ft_read_header
2010-07-21 09:57 jansch
* public/private/fixtrialdef.m: changed error into warning
2010-07-21 08:20 jansch
* ft_prepare_mesh.m: make handling of various input configurations more robust
2010-07-20 07:47 roboos
* ft_electroderealign.m, ft_multiplotTFR.m, ft_singleplotER.m, ft_singleplotTFR.m,
private/prepare_mesh_manual.m: some additional changes in the function calls to the
plotting functions, related to the ft_ prefixing
see also http://bugzilla.fcdonders.nl/show_bug.cgi?id=119
2010-07-20 07:41 roboos
* ft_componentbrowser.m, ft_databrowser.m, ft_electroderealign.m, ft_layoutplot.m,
ft_movieplotER.m, ft_multiplotER.m, ft_multiplotTFR.m, ft_singleplotTFR.m,
ft_topoplotCC.m, ft_topoplotER.m: since all plotting functions are ft_ prefixed, the
corresponding functions calls also had to be changed
2010-07-20 07:32 roboos
* fileio/ft_filetype.m: speed up the detection of Matlab files by looking at initial MATLAB
string in file
moved spmeeg_mat detection into subfunction
2010-07-19 11:57 vlalit
* ft_prepare_concentricspheres.m: One more
2010-07-19 11:44 vlalit
* ft_databrowser.m, ft_headmodelplot.m, ft_multiplotER.m, ft_prepare_localspheres.m,
ft_singleplotER.m, ft_topoplotER.m, plotting/ft_plot_topo.m, plotting/ft_select_channel.m,
plotting/ft_select_range.m, private/rejectvisual_channel.m: Added ft_prefixes in the code
mainly to plotting functions to make SPM work again.
2010-07-19 10:48 stekla
* realtime/buffer/src/rdaserver.c, realtime/buffer/test/demo_buffer_rda.exe,
realtime/rda2ft, realtime/rda2ft/Makefile, realtime/rda2ft/pthreadGC2.dll,
realtime/rda2ft/rda2ft.c, realtime/rda2ft/rda2ft.exe: Added "rda2ft" tool (reads data from
RDA server, writes to FT buffer), added clipping of marker position in rdaserver.
2010-07-19 09:13 stekla
* realtime/buffer/python/FieldTrip.py, realtime/buffer/src/rdaserver.c,
realtime/buffer/src/rdaserver.h, realtime/buffer/test/demo_buffer.exe,
realtime/buffer/test/demo_buffer_rda.c, realtime/buffer/test/demo_buffer_rda.exe,
realtime/buffer/test/demo_combined.exe, realtime/buffer/test/demo_event.exe,
realtime/buffer/test/demo_sinewave.exe: Added "blocksize" option for RDA server +
demo_buffer_rda.
2010-07-19 02:21 josdie
* fileio/ft_read_event.m: fixed typo in just submitted egi_sbin code. Oops.
2010-07-18 12:34 roboos
* ft_preprocessing.m, private/guidelines.m: first attempt at making smart help and
guidelines
2010-07-18 10:26 roboos
* realtime/buffer/pthreads-win64/lib/pthreadGC2.dll,
realtime/buffer/pthreads-win64/lib/pthreadGC2.lib: added other libraries for pthreads on
windows64 from
http://www.signal.uu.se/Toolbox/dream/download.shtml#WINLIBS_64
2010-07-18 04:38 josdie
* fileio/ft_read_event.m: egi_sbin (EGI simple binary format) only dubs an event a "trial"
type if its duration is the same as the segment.
Also, only adds "trial" type events based on segHdr if it doesn't already have a "trial"
type even for every segment.
2010-07-16 10:33 roboos
* ft_wizard.m: moved wizard from cvs to svn, added ft_ prefix
2010-07-16 07:04 roboos
* fieldtripdefs.m: added plotting/compat to path in fieldtripdefs, otherwise high-level
plotting functions would not work
2010-07-15 15:36 crimic
* plotting/compat/uilayout.m: added new compat function uilayout
2010-07-15 15:33 crimic
* plotting/ft_select_circle.m, plotting/ft_select_contour.m: added new function
2010-07-15 15:29 crimic
* plotting/select_circle.m, plotting/select_contour.m: This line, and those below, will be
ignored--
D plotting/select_contour.m
D plotting/select_circle.m
2010-07-15 15:26 crimic
* plotting/ft_uilayout.m, plotting/select_contour.m, plotting/uilayout.m: minor changes
2010-07-15 14:57 crimic
* plotting/select_circle.m, plotting/select_contour.m: minor changes
2010-07-15 14:40 crimic
* plotting/compat, plotting/compat/plot_box.m, plotting/compat/plot_dipole.m,
plotting/compat/plot_headshape.m, plotting/compat/plot_lay.m, plotting/compat/plot_line.m,
plotting/compat/plot_matrix.m, plotting/compat/plot_mesh.m, plotting/compat/plot_ortho.m,
plotting/compat/plot_sens.m, plotting/compat/plot_slice.m, plotting/compat/plot_text.m,
plotting/compat/plot_topo.m, plotting/compat/plot_topo3d.m, plotting/compat/plot_vector.m,
plotting/compat/plot_vol.m, plotting/compat/select_box.m,
plotting/compat/select_channel.m, plotting/compat/select_circle.m,
plotting/compat/select_contour.m, plotting/compat/select_point.m,
plotting/compat/select_point3d.m, plotting/compat/select_range.m, plotting/ft_plot_box.m,
plotting/ft_plot_dipole.m, plotting/ft_plot_headshape.m, plotting/ft_plot_lay.m,
plotting/ft_plot_line.m, plotting/ft_plot_matrix.m, plotting/ft_plot_mesh.m,
plotting/ft_plot_ortho.m, plotting/ft_plot_sens.m, plotting/ft_plot_slice.m,
plotting/ft_plot_text.m, plotting/ft_plot_topo3d.m, plotting/ft_plot_vector.m,
plotting/ft_plot_vol.m, plotting/ft_select_box.m, plotting/ft_select_channel.m,
plotting/ft_select_circle.m, plotting/ft_select_contour.m, plotting/ft_select_point.m,
plotting/ft_select_point3d.m, plotting/ft_select_range.m, plotting/plot_box.m,
plotting/plot_dipole.m, plotting/plot_headshape.m, plotting/plot_lay.m,
plotting/plot_line.m, plotting/plot_matrix.m, plotting/plot_mesh.m, plotting/plot_ortho.m,
plotting/plot_sens.m, plotting/plot_slice.m, plotting/plot_text.m, plotting/plot_topo.m,
plotting/plot_topo3d.m, plotting/plot_vector.m, plotting/plot_vol.m,
plotting/select_box.m, plotting/select_channel.m, plotting/select_point.m,
plotting/select_point3d.m, plotting/select_range.m: change names in the plotting folder
according to ft_ prefix
2010-07-15 10:46 vlalit
* fileio/private/fif2grad.m, fileio/private/mne2grad.m: Change the sign of planar gradient
as it was discovered by Laurence that the sign is wrong.
2010-07-14 11:00 jansch
* public/hastoolbox.m: added connectivity module
2010-07-14 10:59 jansch
* fieldtripdefs.m: added connectivity module
2010-07-14 10:19 jansch
* connectivity/ft_connectivity_corr.m: fixed small bug related to faulty conversion of cfg
into keyvals
2010-07-14 09:55 roboos
* fileio/private/read_vtk.m, fileio/private/write_vtk.m: moved from CVS repository to SVN
repository
2010-07-13 18:35 vlalit
* fileio/ft_read_event.m: Moved reading the header to individual cases as agreed with Robert
2010-07-13 18:24 vlalit
* external/ctf/getCTFdata.m, external/ctf/readCTFds.m, external/ctf/writeCTFds.m: Fixes for
bugs in CTF functions from Erick Ortiz
2010-07-13 14:02 vlalit
* fileio/ft_read_event.m, fileio/private/read_spmeeg_event.m: Bug fixes
2010-07-13 09:03 jansch
* public/private/fixtrialdef.m: return to invoking function if trialdef is already present
2010-07-12 20:11 roboos
* fileio/ft_read_event.m: removed the creation of trial-events in case hdr.nTrials>1 for
some specific formats, and added it at the end of the code so that it is done for all
formats with multiple trials
2010-07-12 19:41 roboos
* clusterrandanalysis.m, compat/surfaceplot.m, compat/topoplot.m, plotSelection.m,
public/source2full.m, public/source2grid.m, public/source2sparse.m, source2full.m,
source2grid.m, source2sparse.m, sourcestatistics_parametric.m,
sourcestatistics_randcluster.m, sourcestatistics_randomization.m, surfaceplot.m,
topoplot.m: cleaned up the main directory, removed some obsolete functions, moved some to
compat and some to public
2010-07-12 18:52 jansch
* ft_freqanalysis.m, ft_megplanar.m, ft_megrealign.m: enabled support for trialinfo and
trialdef
2010-07-12 17:59 marvger
* multivariate/classifiers/glmlogreg.m: bug fix glmnet
2010-07-12 16:11 jansch
* ft_rejectvisual.m: fixed typo and removed trlold
2010-07-12 14:26 jansch
* ft_connectivityanalysis.m: moved subfunctions for the computation of various connectivity
metric into the connectivity module. no functional changes. modified api to
ft_connectivity_corr to consist of key-value pairs
2010-07-12 14:25 jansch
* connectivity, connectivity/ft_connectivity_corr.m, connectivity/ft_connectivity_dtf.m,
connectivity/ft_connectivity_granger.m, connectivity/ft_connectivity_pdc.m,
connectivity/ft_connectivity_psi.m, connectivity/oldstuff.m: first commit, no functional
change
2010-07-12 13:18 vlalit
* fileio/ft_read_header.m: set nSamplesPre to 0 for continuous data converted with MNE
toolbox (as agreed with Laurence)
2010-07-12 09:30 marvger
* multivariate/classifiers/dynamic_classifier.m, multivariate/classifiers/hmm.m,
multivariate/featureselectors/searchlight.m,
multivariate/toolboxes/gerven/bayesbrain/factors/potentials/canonical_pot.m,
multivariate/validators/crossvalidator.m: glmnet
2010-07-10 21:02 roboos
* peer/peercellfun.m, peer/peerfeval.m, peer/peerget.m, peer/src/peerslave.c,
public/keyval.m: some small changes, extra verbosity
2010-07-10 15:26 roboos
* peer/peerfeval.m: fixed small problem with reshaping of vector
2010-07-10 13:13 roboos
* peer/peer.mexa64, peer/peerslave: recompiled on mentat001 with matlab2008b
2010-07-10 13:09 roboos
* peer/delayedexit.mexmaci, peer/memprofile.mexmaci, peer/peer.mexmaci, peer/peerexec.m,
peer/peerfeval.m, peer/peerzombie.m, peer/private/getcustompath.m,
peer/private/getcustompwd.m, peer/private/setcustompath.m, peer/private/setcustompwd.m,
peer/src/announce.c, peer/src/discover.c, peer/src/extern.c, peer/src/extern.h,
peer/src/fairshare.c, peer/src/peer.c, peer/src/tcpserver.c, peer/src/tcpsocket.c,
peer/src/util.c: fixed a nasty bug in announce_once (in the c-code) that caused
sockets/files to leak
implemented some speedups in peerexex, mainly using persistent variables for the custom
path and pwd handing
created separate functions for cusrompath and custompwd
recompiled on macbook pro with matlab2009b
2010-07-10 09:31 roboos
* peer/delayedexit.o: deleted a compiled object file that was accidentally added
2010-07-10 09:30 roboos
* peer/delayedexit.mexmaci, peer/delayedexit.o, peer/peerfeval.m, peer/peerslave: added a
persistent previous_argin and argout to some subfunctions of peerfeval to speed up
repeated calls from within peercellfun
2010-07-10 09:12 roboos
* fileio/private/tokenize.m: added persistent variable for caching input/output when
repeated calls have same input args
2010-07-09 11:49 jansch
* ft_rejectvisual.m: further improved support for trialdef and trialinfo
2010-07-09 11:29 jansch
* ft_denoise_synthetic.m, ft_timelockanalysis.m: built in support for trialdef/trialinfo
2010-07-09 11:16 jansch
* fileio/ft_read_header.m: fixed bug in dealing with ctf balancing coefficients (introduced
by me earlier)
2010-07-09 06:59 jansch
* fileio/ft_read_header.m: inserted workaround to avoid trying to read ctf balancing
coefficients if these are not present in the data. results in significant speed up
2010-07-08 20:33 roboos
* peer/src/peerinit.c: added some additional randomness to host->id
it should be further improved, which on linux is possible by using /dev/random
2010-07-08 20:20 roboos
* peer/peerinfo.m: give some additional information on screen
2010-07-08 14:44 jansch
* ft_denoise_synthetic.m: removed incorrect inverse in call to ft_apply_montage
2010-07-08 12:16 jansch
* ft_databrowser.m: removed call to findcfg; explicitly try to reconstruct trlorg from
trialdef field and offset
2010-07-07 22:12 roboos
* peer/memprofile.mexmaci, peer/peer.mexmaci, peer/peerexec.m, peer/peerslave.m,
peer/src/peerslave.c: changed peerslave.m matlab code into using the same peerexec helper
function as the command-line peerslave
moved the directory (pwd/path) handling into peerexec
moved the clearing of figures, handles, files and globals into peerexec
fixed bug in peerexec, caused by an error inside the try=-catch loop that was caught as
object, and which could not be passed to outside the engine (as struct it now works)
changed the timeout of the engine from 30 to 10 seconds
2010-07-07 21:15 roboos
* peer/peer.mexa64, peer/peerslave, peer/src/discover.c: recompiled the latest version (with
the simplified handling of the multicast and localhost discovery) on mentat001 with
matlab77
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