Table of Contents

Publications using FieldTrip

If you have published a paper which uses FieldTrip and which is not yet listed here, feel free to add it! Just click the edit button (under Page tools) at the top of this page.

If you are looking for the papers that describe the algorithms implemented in FieldTrip, please look at the references to implemented methods.

Please cite the FieldTrip Reference Paper when you have used FieldTrip for data analysis in your study.

Oostenveld, R., Fries, P., Maris, E., Schoffelen, JM (2011) FieldTrip: Open Source Software for Advanced Analysis of MEG, EEG, and Invasive Electrophysiological Data. Computational Intelligence and Neuroscience Volume 2011 (2011), Article ID 156869, doi:10.1155/2011/156869

This page has last been updated on 03 November 2011.

Published in 2012

Kahlbrock, N., Butz, M., May, E. S., & Schnitzler, A. (2012) Sustained gamma band synchronization in early visual areas reflects the level of selective attention. NeuroImage, 59(1), 673–681.

Published in 2011

Capilla, A., Pazo-Alvarez, P., Darriba, A., Campo, P., & Gross, J. (2011) Steady-State Visual Evoked Potentials Can Be Explained by Temporal Superposition of Transient Event-Related Responses. PloS one, 6(1), 14543.
Colrain, I. M., Sullivan, E. V., Ford, J. M., Mathalon, D. H., McPherson, S. L., & Roach, B. J., et al. (2011) Frontally mediated inhibitory processing and white matter microstructure: age and alcoholism effects. Psychopharmacology, , 1–11.
Foti, D., Weinberg, A., Dien, J., & Hajcak, G. (2011) Event-related potential activity in the basal ganglia differentiates rewards from nonrewards: Temporospatial principal components analysis and source localization of the feedback negativity. Human Brain Mapping, , .
Goepel, J., Kissler, J., Rockstroh, B., & Paul-Jordanov, I. (2011) Medio-Frontal and Anterior Temporal abnormalities in children with attention deficit hyperactivity disorder(ADHD) during an acoustic antisaccade task as revealed by electro-cortical source reconstruction. BMC psychiatry, 11(7), 1–10.
Gould, I. C., Rushworth, M. F., & Nobre, A. C. (2011) Indexing the graded allocation of visuospatial attention using anticipatory alpha oscillations. Journal of neurophysiology, 105(3), 1318–1326.
Haegens, S., Haendel, B. F., & Jensen, O. (2011) Top-Down Controlled Alpha Band Activity in Somatosensory Areas Determines Behavioral Performance in a Discrimination Task. The Journal of Neuroscience, 31(14), 5197––5204.
Hirschmann, J., Ozkurt, T. E., Butz, M., Homburger, M., Elben, S., & Hartmann, C. J., et al. (2011) Distinct oscillatory STN-cortical loops revealed by simultaneous MEG and local field potential recordings in patients with Parkinson's disease. Neuroimage, 55(3), 1159–1168.
Jung, K. Y., Koo, Y. S., Kim, B. J., Ko, D., Lee, G. T., Kim, K. H., & Im, C. H. (2011) Electrophysiologic disturbances during daytime in patients with restless legs syndrome: Further evidence of cognitive dysfunction?. Sleep Medicine, 12(4), 416–421.
Lei, X., Xu, P., Luo, C., Zhao, J., Zhou, D., & Yao, D. (2011) FMRI functional networks for EEG source imaging. Human Brain Mapping, , n/a–n/a.
Litvak, V., Jha, A., Eusebio, A., Oostenveld, R., Foltynie, T., & Limousin, P., et al. (2011) Resting oscillatory cortico-subthalamic connectivity in patients with Parkinson's disease. Brain, 134(2), 359.
Litvak, V., Mattout, J., Kiebel, S., Phillips, C., Henson, R., & Kilner, J., et al. (2011) EEG and MEG Data Analysis in SPM8. Computational Intelligence and Neuroscience, 2011(852961), .
Maestu, F., Baykova, E., Ruiz, J. M., Montejo, P., Montenegro, M., & Llanero, M., et al. (2011) Increased biomagnetic activity in healthy elderly with subjective memory complaints. Clinical Neurophysiology, 122(3), 499–505.
Maestú, F., Yubero, R., Moratti, S., Campo, P., Gil-Gregorio, P., & Paul, N., et al. (2011) Brain Activity Patterns in Stable and Progressive Mild Cognitive Impairment During Working Memory as Evidenced by Magnetoencephalography. Journal of Clinical Neurophysiology, 28(2), 202–209.
Meltzer, J. A., & Braun, A. R. (2011) An EEG-MEG Dissociation between Online Syntactic Comprehension and Post Hoc Reanalysis. Front Hum Neurosci, 5, 10.
Meyer, M., Hunnius, S., van Elk, M., van Ede, F., & Bekkering, H. (2011) Joint action modulates motor system involvement during action observation in 3-year-olds. Experimental Brain Research, , 1–12.
Mulder, E. R., Horstman, A. M., Gerrits, K., Massa, M., Kleine, B. U., & de Haan, A., et al. (2011) Enhanced physiological tremor deteriorates plantar flexor torque steadiness after bed rest. Journal of Electromyography and Kinesiology, 21(2), 384–393.
Oostenveld, R., Fries, P., Maris, E., & Schoffelen, J. M. (2011) FieldTrip: open source software for advanced analysis of MEG, EEG, and invasive electrophysiological data. Computational Intelligence and Neuroscience, 2011(156869), 1–9.
Pernet, C. R., Chauveau, N., Gaspar, C., & Rousselet, G. A. (2011) Limo EEG: a toolbox for hierarchical linear modeling of electroencephalographic data. Computational Intelligence and Neuroscience, 2011(831409), 1–11.
Popov, T., Jordanov, T., Weisz, N., Elbert, T., Rockstroh, B., & Miller, G. A. (2011) Evoked and induced oscillatory activity contributes to abnormal auditory sensory gating in Schizophrenia. NeuroImage, 56(1), 307–314.
Sander, M. C., Werkle-Bergner, M., & Lindenberger, U. (2011) Contralateral Delay Activity Reveals Life-Span Age Differences in Top-Down Modulation of Working Memory Contents. Cerebral Cortex, , .
Scheeringa, R., Fries, P., Petersson, K. M., Oostenveld, R., Grothe, I., Norris D.G., H. P., & Bastiaansen, M. C. (2011) Neuronal dynamics underlying high- and low-frequency EEG oscillations contribute independently to the human BOLD signal. Neuron, 69(3), 572–583.
Scheeringa, R., Mazaheri, A., Bojak, I., Norris, D. G., & Kleinschmidt, A. (2011) Modulation of visually evoked cortical FMRI responses by phase of ongoing occipital alpha oscillations. J Neurosci., 31(10), 3813–3820.
Schoffelen, J. M., Poort, J., Oostenveld, R., & Fries, P. (2011) Selective Movement Preparation Is Subserved by Selective Increases in Corticomuscular Gamma-Band Coherence. The Journal of Neuroscience, 31(18), 6750.
Todorovic, A., van Ede, F., Maris, E., & de Lange, F. P. (2011) Prior Expectation Mediates Neural Adaptation to Repeated Sounds in the Auditory Cortex: An MEG Study.. The Journal of Neuroscience, 31(25), 9118.
Vicente, R., Wibral, M., Lindner, M., & Pipa, G. (2011) Transfer entropy: a model-free measure of effective connectivity for the neurosciences. Journal of computational neuroscience, 30(1), 45–67.
Vlek, R., Schaefer, R., Gielen, C., Farquhar, J., & Desain, P. (2011) Sequenced subjective accents for brain--computer interfaces. Journal of Neural Engineering, 8, 036002.
Wang, Y., Xiang, J., Vannest, J., Holroyd, T., Narmoneva, D., & Horn, P., et al. (2011) Neuromagnetic measures of word processing in bilinguals and monolinguals. Clinical Neurophysiology, , .
Wibral, M., Rahm, B., Rieder, M., Lindner, M., Vicente, R., & kaiser , J. (2011) Transfer entropy in magnetoencephalographic data: Quantifying information flow in cortical and cerebellar networks.. Prog Biophys Mol Biol, 105, 1–2.
Woolrich, M., Hunt, L., Groves, A., & Barnes, G. (2011) MEG Beamforming using Bayesian PCA for Adaptive Data Covariance Matrix Regularisation. NeuroImage, , .
Zaehle, T., Sandmann, P., Thorne, J. D., Jancke, L., & Herrmann, C. S. (2011) Transcranial direct current stimulation of the prefrontal cortex modulates working memory performance: Combined behavioural and electrophysiological evidence. BMC neuroscience, 12(1), 2.
van Ede, F., de Lange, F., Jensen, O., & Maris, E. (2011) Orienting Attention to an Upcoming Tactile Event Involves a Spatially and Temporally Specific Modulation of Sensorimotor Alpha-and Beta-Band Oscillations. The Journal of Neuroscience, 31(6), 2016.

Published in 2010

Baggio, G., Choma, T., van Lambalgen, M., & Hagoort, P. (2010) Coercion and compositionality. Journal of Cognitive Neuroscience, 22(9), 2131–2140.
Bosman, C. A., Zamorano, F., & Aboitiz, F. (2010) Functional differences of low-and high-frequency oscillatory dynamics during illusory border perception. Brain research, 1319, 92–102.
Chan, A. M., Halgren, E., Marinkovic, K., & Cash, S. S. (2010) Decoding word and category-specific spatiotemporal representations from MEG and EEG. Neuroimage, 54(4), 3028–3039.
Haegens, S., Osipova, D., Oostenveld, R., & Jensen, O. (2010) Somatosensory working memory performance in humans depends on both engagement and disengagement of regions in a distributed network. Human brain mapping, 31(1), 26–35.
Keil, J., Ihssen, N., & Weisz, N. (2010) Prestimulus Oscillatory Brain Activity Influences the Perception of the McGurk Effect.
Keil, J., Weisz, N., Paul-Jordanov, I., & Wienbruch, C. (2010) Localization of the magnetic equivalent of the ERN and induced oscillatory brain activity. Neuroimage, 51(1), 404–411.
Lange, J., Oostenveld, R., & Fries, P. (2010) Perception of the touch-induced visual double-flash illusion correlates with changes of rhythmic neuronal activity in human visual and somatosensory areas. Neuroimage, 54(2), 1395–1405.
Litvak, V., Eusebio, A., Jha, A., Oostenveld, R., Barnes, G. R., & Penny, W. D., et al. (2010) Optimized beamforming for simultaneous MEG and intracranial local field potential recordings in deep brain stimulation patients. Neuroimage, 50(4), 1578–1588.
Lorenz, I., M{ü}ller, N., Schlee, W., Langguth, B., & Weisz, N. (2010) Short-term effects of single repetitive TMS sessions on auditory evoked activity in patients with chronic tinnitus. Journal of neurophysiology, 104(3), 1497.
Luessi, M., Babacan, S. D., Molina, R., Booth, J. R., & Katsaggelos, A. K. (2010) Bayesian symmetrical EEG/fMRI fusion with spatially adaptive priors. NeuroImage, 55(1), 113–132.
Maris, E., van Vugt, M., & Kahana, M. (2010) Spatially distributed patterns of oscillatory coupling between high-frequency amplitudes and low-frequency phases in human iEEG. Neuroimage, 54(2), 836.
Mazaheri, A., Coffey-Corina, S., Mangun, G. R., Bekker, E. M., Berry, A. S., & Corbett, B. A. (2010) Functional disconnection of frontal cortex and visual cortex in attention-deficit/hyperactivity disorder. Biological psychiatry, 67(7), 617–623.
Murphy, B., & Poesio, M. (2010) Detecting semantic category in simultaneous EEG/MEG recordings.
Nottage, J. F. (2010) Uncovering Gamma in Visual Tasks. Brain topography, 23(1), 58–71.
Piantoni, G., Kline, K. A., & Eagleman, D. M. (2010) Beta oscillations correlate with the probability of perceiving rivalrous visual stimuli. Journal of vision, 10(13), .
Sadaghiani, S., Scheeringa, R., Lehongre, K., Morillon, B., & Giraud A.L. and, K. A. (2010) Intrinsic connectivity networks, alpha oscillations, and tonic alertness: a simultaneous electroencephalography/functional magnetic resonance imaging study. J Neurosci., 30(30), 10243–10250.
Sander, T., Bock, A., Leistner, S., Kuhn, A., & Trahms, L. (2010) Coherence and imaginary part of coherency identifies cortico-muscular and cortico-thalamic coupling.
Schaefer, R. S., Vlek, R. J., & Desain, P. (2010) Decomposing rhythm processing: electroencephalography of perceived and self-imposed rhythmic patterns. Psychological research, , 1–12.
Simanova, I., van Gerven, M., Oostenveld, R., & Hagoort, P. (2010) Identifying Object Categories from Event-Related EEG: Toward Decoding of Conceptual Representations. PloS one, 5(12), 14465.
Snyder, A. C., & Foxe, J. J. (2010) Anticipatory attentional suppression of visual features indexed by oscillatory alpha-band power increases: a high-density electrical mapping study. The Journal of Neuroscience, 30(11), 4024.
Stegeman, D. F., van de Ven, W. J. M., van Elswijk, G. A., Oostenveld, R., & Kleine, B. U. (2010) The [alpha]-motoneuron pool as transmitter of rhythmicities in cortical motor drive. Clinical Neurophysiology, 121(10), 1633–1642.
Torres Valderrama, A., Oostenveld, R., Vansteensel, M. J., Huiskamp, G. M., & Ramsey, N. F. (2010) Gain of the human dura in vivo and its effects on invasive brain signal feature detection. Journal of Neuroscience Methods, 187(2), 270–279.
Van Der Werf, J., Jensen, O., Fries, P., & Medendorp, W. P. (2010) Neuronal synchronization in human posterior parietal cortex during reach planning. The Journal of Neuroscience, 30(4), 1402.
Van Elk, M., Van Schie, H. T., Van Den Heuvel, R., & Bekkering, H. (2010) Semantics in the motor system: motor-cortical beta oscillations reflect semantic knowledge of end-postures for object use. Frontiers in Human Neuroscience, 4(8), .
Vinck, M., van Wingerden, M., Womelsdorf, T., Fries, P., & Pennartz, C. (2010) The pairwise phase consistency: A bias-free measure of rhythmic neuronal synchronization. Neuroimage, 51(1), 112–122.
Wang, L., Bastiaansen, M., Yang, Y., & Hagoort, P. (2010) The influence of information structure on the depth of semantic processing: How focus and pitch accent determine the size of the N400 effect. Neuropsychologia, 49(5), 813–820.
Wibral, M., Rahm, B., Rieder, M., Lindner, M., Vicente, R., & Kaiser, J. (2010) Transfer entropy in magnetoencephalographic data: Quantifying information flow in cortical and cerebellar networks. Progress in Biophysics and Molecular Biology, 105(1--2), 80.
van Ede, F., Jensen, O., & Maris, E. (2010) Tactile expectation modulates pre-stimulus [beta]-band oscillations in human sensorimotor cortex. Neuroimage, 51(2), 867–876.
van Elk, M., van Schie, H., Zwaan, R., & Bekkering, H. (2010) The functional role of motor activation in language processing: Motor cortical oscillations support lexical-semantic retrieval. Neuroimage, 50(2), 665–677.
van Elswijk, G., Maij, F., Schoffelen, J. M., Overeem, S., Stegeman, D. F., & Fries, P. (2010) Corticospinal beta-band synchronization entails rhythmic gain modulation. The Journal of Neuroscience, 30(12), 4481.

Published in 2009

Bauer, M., Oostenveld, R., & Fries, P. (2009) Tactile stimulation accelerates behavioral responses to visual stimuli through enhancement of occipital gamma-band activity. Vision Res, 49, 931–42.
Brookes, M. J., Vrba, J., Mullinger, K. J., Geirsdóttir, G., & others (2009) Source localisation in concurrent EEG/fMRI: applications at 7T. Neuroimage, 45(2), 440–452.
Keil, J., Weisz, N., Paul, I., & Wienbruch, C. (2009) Error related fields: localizing the magnetic equivalent of the ERN.
Gerven, M. V., Cseke, B., Oostenveld, R., & Heskes, T. (2009) Bayesian Source Localization with the Multivariate Laplace Prior. Advances in Neural Information Processing Systems 22, , 1901–9.
Ploner, M., Schoffelen, J. M., Schnitzler, A., & Gross, J. (2009) Functional integration within the human pain system as revealed by Granger causality. Hum Brain Mapp, 30, 4025–4032.
Rubehn, B., Bosman, C., Oostenveld, R., Fries, P., & Stieglitz, T. (2009) A MEMS-based flexible multichannel ECoG-electrode array. Journal of neural engineering, 6, 036003.
Scheeringa, R., Petersson, K., Oostenveld, R., Norris, D., Hagoort, P., & Bastiaansen, M. (2009) Trial-by-trial coupling between EEG and BOLD identifies networks related to alpha and theta EEG power increases during working memory maintenance. Neuroimage, 44, 1224–38.
Schoffelen, J. M., & Gross, J. (2009) Source connectivity analysis with MEG and EEG. Hum Brain Mapp, 30, 1857–1865.
Westmijse, I., Ossenblok, P., Gunning, B., & Van Luijtelaar, G. (2009) Onset and propagation of spike and slow wave discharges in human absence epilepsy: a MEG study. Epilepsia, 50(12), 2538–2548.

Published in 2008

Bastiaansen, M. C., Oostenveld, R., Jensen, O., & Hagoort, P. (2008) I see what you mean: Theta power increases are involved in the retrieval of lexical semantic information. Brain Lang., 40(3), 1319–1327.
Koelewijn, T., van Schie, H. T., Bekkering, H., Oostenveld, R., & Jensen, O. (2008) Motor-cortical beta oscillations are modulated by correctness of observed action. Neuroimage, 40, 767–775.
Nieuwenhuis, I. L., Takashima, A., Oostenveld, R., Fernandez, G., & Jensen, O. (2008) Visual areas become less engaged in associative recall following memory stabilization. Neuroimage, 40(3), 1319–1327.
Osipova, D., Hermes, D., & Jensen, O. (2008) Gamma power is phase-locked to posterior alpha activity. PLoS One, 3(12), 3990.
Scheeringa, R., Bastiaansen, M. C., Petersson, K. M., Oostenveld, R., Norris, D. G., & Hagoort, P. (2008) Frontal theta EEG activity correlates negatively with the default mode network in resting state. Int J Psychophysiol., 67(3), 242–251.
Schneider, T. R., Debener, S., Oostenveld, R., & Engel, A. K. (2008) Enhanced EEG gamma-band activity reflects multisensory semantic matching in visual-to-auditory object priming. Neuroimage, 42(3), 1244–1254.
Wibral, M., Bledowski, C., Kohler, A., Singer, W., & Muckli, L. (2008) The Timing of Feedback to Early Visual Cortex in the Perception of Long-Range Apparent Motion. Cerebral Cortex, 19(7), 1567–1582.
van Dijk, H., Schoffelen, J. M., Oostenveld, R., & Jensen, O. (2008) Prestimulus oscillatory activity in the alpha band predicts visual discrimination ability. J Neurosci., 28(8), 1816–1823.

Published in 2007

Buiatti, M., Papo, D., Baudonniere, P. M., & van Vreeswijk, C. (2007) Feedback modulates the temporal scale-free dynamics of brain electrical activity in a hypothesis testing task. Neuroscience, 146, 1400–1412.
Davidson, D. J., & Indefrey, P. (2007) An inverse relation between event-related and time-frequency violation responses in sentence processing. Brain Res., 1158, 81–92.
Gross, J., Schnitzler, A., Timmermann, L., & Ploner, M. (2007) Gamma oscillations in human primary somatosensory cortex reflect pain perception. PLoS Biol., 5, 133.
Jokisch, D., & Jensen, O. (2007) Modulation of gamma and alpha activity during a working memory task engaging the dorsal or ventral stream. J. Neurosci., 27, 3244–3251.
Litvak, V., Komssi, S., Scherg, M., Hoechstetter, K., Classen, J., & Zaaroor, M., et al. (2007) Artifact correction and source analysis of early electroencephalographic responses evoked by transcranial magnetic stimulation over primary motor cortex. Neuroimage, 37, 56–70.
Litvak, V., Zeller, D., Oostenveld, R., Maris, E., Cohen, A., & Schramm, A., et al. (2007) LTP-like changes induced by paired associative stimulation of the primary somatosensory cortex in humans: source analysis and associated changes in behaviour. Eur. J. Neurosci., 25, 2862–2874.
Maris, E., & Oostenveld, R. (2007) Nonparametric statistical testing of EEG- and MEG-data. J. Neurosci. Methods, 164, 177–190.
Medendorp, W. P., Kramer, G. F., Jensen, O., Oostenveld, R., Schoffelen, J. M., & Fries, P. (2007) Oscillatory activity in human parietal and occipital cortex shows hemispheric lateralization and memory effects in a delayed double-step saccade task. Cereb. Cortex, 17, 2364–2374.
Siegel, M., Donner, T. H., Oostenveld, R., Fries, P., & Engel, A. K. (2007) High-frequency activity in human visual cortex is modulated by visual motion strength. Cereb. Cortex, 17, 732–741.
Snijders, T. M., Kooijman, V., Cutler, A., & Hagoort, P. (2007) Neurophysiological evidence of delayed segmentation in a foreign language. Brain Res., 1178, 106–113.
Tuladhar, A. M., ter Huurne, N., Schoffelen, J. M., Maris, E., Oostenveld, R., & Jensen, O. (2007) Parieto-occipital sources account for the increase in alpha activity with working memory load. Hum Brain Mapp, 28, 785–792.
Womelsdorf, T., Schoffelen, J. M., Oostenveld, R., Singer, W., Desimone, R., Engel, A. K., & Fries, P. (2007) Modulation of neuronal interactions through neuronal synchronization. Science, 316, 1609–1612.

Published in 2006

Bauer, M., Oostenveld, R., Peeters, M., & Fries, P. (2006) Tactile spatial attention enhances gamma-band activity in somatosensory cortex and reduces low-frequency activity in parieto-occipital areas. J. Neurosci., 26, 490–501.
Hoogenboom, N., Schoffelen, J. M., Oostenveld, R., Parkes, L. M., & Fries, P. (2006) Localizing human visual gamma-band activity in frequency, time and space. Neuroimage, 29, 764–773.
Osipova, D., Takashima, A., Oostenveld, R., Fernandez, G., Maris, E., & Jensen, O. (2006) Theta and gamma oscillations predict encoding and retrieval of declarative memory. J. Neurosci., 26",67(3):242-51 Pages="7523--7531, .
Praamstra, P., Kourtis, D., Kwok, H. F., & Oostenveld, R. (2006) Neurophysiology of implicit timing in serial choice reaction-time performance. J. Neurosci., 26, 5448–5455.
Takashima, A., Jensen, O., Oostenveld, R., Maris, E., van de Coevering, M., & Fernandez, G. (2006) Successful declarative memory formation is associated with ongoing activity during encoding in a distributed neocortical network related to working memory: a magnetoencephalography study. Neuroscience, 139, 291–297.
de Wit, T. C., Bauer, M., Oostenveld, R., Fries, P., & van Lier, R. (2006) Cortical responses to contextual influences in amodal completion. Neuroimage, 32, 1815–1825.
van Aalderen-Smeets, S. I., Oostenveld, R., & J., S. (2006) Investigating neurophysiological correlates of metacontrast masking with magnetoencephalography. Advances in Cognitive Psychology, 2, 21–35.

Published in 2005

Schoffelen, J. M., Oostenveld, R., & Fries, P. (2005) Neuronal coherence as a mechanism of effective corticospinal interaction. Science, 308, 111–113.

Year unknown

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